Parental gene:

RPS24, ENSLAFG00000027878

Aliases:None
Description:40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:G3UL73]
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_10:60443766..60445938(+)


>ENSLAFG00000027878
CAGAATGACACGGTAACTATCCGGACCAGGAAGTTCATGACCAACCGACTACTCCAGCGGAAACAGATGGTCATTGATGT
CCTTCACCCTGGGAAGGCAACAGTACCTAAGACAGAAATTCGAGAAAAACTAGCCAAGATGTACAAGACCACACCAGATG
TCATCTTTGTGTTTGGATTCAGAACCCATTTTGGTGGTGGAAAGACTACTGGCTTCGGCATGATTTATGATTCCTTGGAT
TATGCAAAGAAAAATGAACCTAAACACAGACTTGCAAGACACGGCCTGTATGAGAAGAAAAAGACCTCAAGGAAACAGCG
CAAGGAGCGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAACGTTGGTGCAGGCAAGAAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017818 ortholog_one2one 17 retrogenes
retro_amel_1043, retro_amel_1258, retro_amel_1303, retro_amel_1397, retro_amel_145, retro_amel_1814, retro_amel_1832, retro_amel_225, retro_amel_24, retro_amel_251, retro_amel_328, retro_amel_331, retro_amel_515, retro_amel_718, retro_amel_768, retro_amel_81, retro_amel_886,
Bos taurus ENSBTAG00000013264 possible_ortholog 9 retrogenes
retro_btau_1137, retro_btau_1311, retro_btau_1562, retro_btau_285, retro_btau_467, retro_btau_577, retro_btau_586, retro_btau_788, retro_btau_980,
Cavia porcellus ENSCPOG00000020096 ortholog_one2one 3 retrogenes
retro_cpor_1333, retro_cpor_14, retro_cpor_923,
Dipodomys ordii ENSDORG00000000189 possible_ortholog 4 retrogenes
retro_dord_248, retro_dord_498, retro_dord_717, retro_dord_766,
Felis catus ENSFCAG00000000849 ortholog_one2one 3 retrogenes
retro_fcat_19, retro_fcat_772, retro_fcat_85,
Homo sapiens ENSG00000138326 possible_ortholog 3 retrogenes
retro_hsap_1511, retro_hsap_526, retro_hsap_658,
Gadus morhua ENSGMOG00000012595 ortholog_many2many 1 retrogene
retro_gmor_15,
Myotis lucifugus ENSMLUG00000024102 possible_ortholog 1 retrogene
retro_mluc_260,
Mustela putorius furo ENSMPUG00000003778 possible_ortholog 1 retrogene
retro_mputfur_10,
Mus musculus ENSMUSG00000025290 possible_ortholog 13 retrogenes
retro_mmus_1101, retro_mmus_1462, retro_mmus_1589, retro_mmus_1592, retro_mmus_1599, retro_mmus_2134, retro_mmus_2332, retro_mmus_2497, retro_mmus_2984, retro_mmus_3162, retro_mmus_321, retro_mmus_3233, retro_mmus_602,
Oryctolagus cuniculus ENSOCUG00000012472 possible_ortholog 1 retrogene
retro_ocun_16,
Otolemur garnettii ENSOGAG00000011005 possible_ortholog 3 retrogenes
retro_ogar_1000, retro_ogar_2, retro_ogar_2130,
Pan troglodytes ENSPTRG00000002666 possible_ortholog 10 retrogenes
retro_ptro_1023, retro_ptro_1114, retro_ptro_1257, retro_ptro_1555, retro_ptro_1885, retro_ptro_2376, retro_ptro_362, retro_ptro_393, retro_ptro_478, retro_ptro_983,
Rattus norvegicus ENSRNOG00000010189 ortholog_one2one 1 retrogene
retro_rnor_206,
Ictidomys tridecemlineatus ENSSTOG00000013000 possible_ortholog 4 retrogenes
retro_itri_167, retro_itri_376, retro_itri_528, retro_itri_728,
Tarsius syrichta ENSTSYG00000006715 possible_ortholog 1 retrogene
retro_tsyr_1919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_190 65.65 99.23
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2. retro_lafr_303 87.60 99.23
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3. retro_lafr_340 71.32 99.23
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4. retro_lafr_439 67.20 93.08
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5. retro_lafr_558 92.31 99.23
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6. retro_lafr_596 81.82 93.08
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7. retro_lafr_669 76.92 99.23
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8. retro_lafr_854 75.76 99.23
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9. retro_lafr_995 78.79 98.46
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10. retro_lafr_1017 68.22 99.23
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Download FASTA sequences of all ENSLAFG00000027878 retrocopies