Parental gene:

psmb5 (1 of 2), ENSLACG00000015194

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 5 [Source:ZFIN;Acc:ZDB-GENE-990415-215]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126769.1:1196757..1205729(-)


>ENSLACG00000015194
ATGGCGTTGGCAGATGTACTGCGTGATGAATCAGTGGCTTTTCGGTTCGGTTTGCCCGGTGGTTCGGTTCTGGGACCCGG
GCCAGCGGGCTTGAGCCTGGCGGCACCGAAGCTGATCGGGCTGGGAGAAGAGGAAGAGAACCAAGCCCCGAAAATCGAGT
TTCTACACGGAACCACCACGCTGGCTTTCAAGTTCTTCCATGGTGTGCTGGTGGCGGTGGACTCCCGCGCTACGGCGGGC
TCTTACATTGCTTCACAGACGGTGAAGAAGGTTATCGAGATTAACCCATACCTGCTGGGGACCATGGCGGGTGGTGCAGC
TGACTGTAGCTTCTGGGAGCGCCTCCTGGCCCGACAGTGCCGCATCTATGAGCTGAGGAACAAGGAGAGGATCTCTGTGG
CTGCAGCTTCCAAATTGCTGGCCAATATGGTCTACCAGTACAAGGGAATGGGGCTGTCCATGGGGACGATGATCTGTGGC
TGGGACAAGCGGGGCCCAGGCCTATATTTTGTTGATAGTGAAGGAAACCGGATTACTGGGGACAACTTCTCTGTGGGCTC
CGGGTCAGTCTACGCATACGGTGTCCTGGACCGCGGCTACCACTTTGACCTGAGCGTGGAAGAGGCCTATGACCTGGCCC
GGCGTGCCATCTACCATGCCACCTACCGCGATGCATACTCGGGCGGGGTGGTCAACATCTACCATGTGCGGGAGGATGGC
TGGTTCCGTGTCTTTCAGGATGATGTCCTCGAGCTGCACGAGGAGTTCCAAGAAGCTGCCTGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 37 .13 RPM
DRP000627_kidney 35 .07 RPM
DRP000627_pelvic_fin 62 .45 RPM
DRP000627_pharynx 49 .94 RPM
DRP000627_gill 39 .54 RPM
DRP000627_tail_muscle 44 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008299 ortholog_one2many 4 retrogenes
retro_cjac_1983, retro_cjac_35, retro_cjac_3888, retro_cjac_4076,
Homo sapiens ENSG00000100804 ortholog_one2many 2 retrogenes
retro_hsap_1634, retro_hsap_95,
Gorilla gorilla ENSGGOG00000026856 ortholog_one2many 2 retrogenes
retro_ggor_1232, retro_ggor_156,
Macropus eugenii ENSMEUG00000003572 ortholog_one2many 1 retrogene
retro_meug_28,
Myotis lucifugus ENSMLUG00000014281 ortholog_one2many 1 retrogene
retro_mluc_1428,
Macaca mulatta ENSMMUG00000006007 ortholog_one2many 1 retrogene
retro_mmul_1558,
Mus musculus ENSMUSG00000022193 ortholog_one2many 1 retrogene
retro_mmus_2887,
Nomascus leucogenys ENSNLEG00000014891 ortholog_one2many 2 retrogenes
retro_nleu_1063, retro_nleu_2936,
Oryctolagus cuniculus ENSOCUG00000013109 ortholog_one2many 1 retrogene
retro_ocun_176,
Pongo abelii ENSPPYG00000005654 ortholog_many2many 1 retrogene
retro_pabe_171,
Sus scrofa ENSSSCG00000002036 ortholog_many2many 1 retrogene
retro_sscr_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_3 87.69 100.00
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Download FASTA sequences of all ENSLACG00000015194 retrocopies