Parental gene:

ACTB, ENSGGOG00000001133

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:5550690..5554166(-)


>ENSGGOG00000001133
CTCACCATGGATGATGATATCGCCGCGCTCGTCGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGA
TGCCCCCCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATT
CCTATGTGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATCGAACACGGCATCGTCACCAAC
TGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCT
GACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCA
TGTACGTTGCTATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGG
GTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCT
GACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACA
TTAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAG
AGCTACGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGCCCTGAGGCACTCTTCCAGCCTTC
CTTCCTGGGAATGGAGTCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAG
ACCTGTACGCCAACACAGTGCTGTCTGGCGGCACCACCATGTACCCTGGCATTGCCGACAGAATGCAGAAGGAGATCACT
GCCCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGTGGCTCCAT
CCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACC
GCAAATGCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1553 .47 RPM
SRP007412_cerebellum 976 .01 RPM
SRP007412_heart 356 .23 RPM
SRP007412_kidney 1454 .29 RPM
SRP007412_liver 1317 .16 RPM
SRP007412_testis 692 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006601 ortholog_one2one 1 retrogene
retro_amel_11,
Cavia porcellus ENSCPOG00000013467 ortholog_one2one 1 retrogene
retro_cpor_60,
Homo sapiens ENSG00000075624 ortholog_one2one 6 retrogenes
retro_hsap_1563, retro_hsap_1894, retro_hsap_3386, retro_hsap_38, retro_hsap_4204, retro_hsap_518,
Gallus gallus ENSGALG00000009621 ortholog_one2one 1 retrogene
retro_ggal_4,
Gorilla gorilla ENSGGOG00000014043 within_species_paralog 6 retrogenes
retro_ggor_1495, retro_ggor_2338, retro_ggor_2449, retro_ggor_273, retro_ggor_413, retro_ggor_520,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Meleagris gallopavo ENSMGAG00000003960 ortholog_one2one 2 retrogenes
retro_mgal_5, retro_mgal_6,
Macaca mulatta ENSMMUG00000011153 possible_ortholog 1 retrogene
retro_mmul_135,
Mustela putorius furo ENSMPUG00000016612 ortholog_one2one 2 retrogenes
retro_mputfur_440, retro_mputfur_461,
Mus musculus ENSMUSG00000029580 ortholog_one2one 7 retrogenes
retro_mmus_1613, retro_mmus_1677, retro_mmus_283, retro_mmus_2880, retro_mmus_3411, retro_mmus_3532, retro_mmus_761,
Ornithorhynchus anatinus ENSOANG00000007716 ortholog_one2one 2 retrogenes
retro_oana_4, retro_oana_8,
Otolemur garnettii ENSOGAG00000008348 ortholog_one2many 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000017336 ortholog_one2one 23 retrogenes
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
Rattus norvegicus ENSRNOG00000034254 ortholog_one2one 10 retrogenes
retro_rnor_1324, retro_rnor_1386, retro_rnor_1799, retro_rnor_2371, retro_rnor_2714, retro_rnor_2856, retro_rnor_2978, retro_rnor_351, retro_rnor_459, retro_rnor_935,
Sarcophilus harrisii ENSSHAG00000012694 ortholog_one2one 4 retrogenes
retro_shar_120, retro_shar_370, retro_shar_62, retro_shar_93,
Sus scrofa ENSSSCG00000007585 ortholog_one2one 1 retrogene
retro_sscr_548,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Ictidomys tridecemlineatus ENSSTOG00000014797 ortholog_one2one 3 retrogenes
retro_itri_149, retro_itri_1881, retro_itri_4,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_44 51.47 81.43
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2. retro_ggor_352 82.31 68.44
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3. retro_ggor_405 80.49 86.47
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4. retro_ggor_477 88.05 66.31
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5. retro_ggor_1177 71.30 90.19
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6. retro_ggor_1188 79.84 100.00
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7. retro_ggor_1211 68.29 54.11
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8. retro_ggor_1266 73.44 50.66
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9. retro_ggor_1297 91.20 99.47
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10. retro_ggor_1332 89.97 100.00
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11. retro_ggor_1387 82.82 59.68
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12. retro_ggor_1622 85.92 56.23
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13. retro_ggor_1825 84.21 80.37
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14. retro_ggor_1890 82.46 70.56
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15. retro_ggor_2292 81.99 84.62
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16. retro_ggor_2774 86.52 98.41
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17. retro_ggor_2817 83.43 94.69
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18. retro_ggor_3002 81.78 62.33
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Download FASTA sequences of all ENSGGOG00000001133 retrocopies