Parental gene:

LRRC57, ENSG00000180979

Aliases:None
Description:leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:26719]
Organism:Human (Homo sapiens)
Coordinates:15:42834719..42841000(-)


>ENSG00000180979
ATGGGAAACAGTGCGCTCCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACCGAGGGCTGAC
CGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGGACCATCGACTTGTCCAACAACAAGATCGAAAGCCTAC
CGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAACAACAACAAACTGACTGTTCTGCCTGATGAG
ATATGCAATCTGAAAAAACTAGAGACGCTAAGCCTAAACAACAATCACCTTAGAGAGCTGCCGTCTACCTTTGGGCAACT
CTCTGCCCTCAAGACCCTGAGCCTCTCTGGGAACCAACTGGGAGCATTACCTCCCCAACTTTGTAGCCTACGGCACCTGG
ATGTGATGGATCTCTCTAAGAACCAGATTCGAAGTATACCTGACTCAGTGGGAGAGCTGCAAGTCATCGAACTCAACCTC
AACCAGAATCAGATATCTCAGATCTCAGTGAAGATATCTTGCTGTCCACGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGCATGCTTCCCCAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGCAATCTTTTTG
AAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCACCAAGAAGAAGTTTGCGTGA

Library Parental gene expression (RPM)
bodymap2_liver 4 .25 RPM
bodymap2_lung 10 .88 RPM
bodymap2_breast 13 .31 RPM
bodymap2_adipose 14 .47 RPM
bodymap2_adrenal 10 .42 RPM
bodymap2_skeletal_muscle 6 .17 RPM
bodymap2_thyroid 16 .67 RPM
bodymap2_prostate 12 .04 RPM
bodymap2_colon 10 .65 RPM
bodymap2_testis 11 .69 RPM
bodymap2_brain 14 .23 RPM
bodymap2_heart 8 .57 RPM
bodymap2_white_blood_cells 14 .33 RPM
bodymap2_lymph_node 10 .76 RPM
bodymap2_ovary 15 .88 RPM
bodymap2_kidney 11 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006482 ortholog_one2one 1 retrogene
retro_chof_2306,
Callithrix jacchus ENSCJAG00000002991 ortholog_one2one 1 retrogene
retro_cjac_2819,
Homo sapiens ENSG00000148484 other_paralog 1 retrogene
retro_hsap_575,
Gorilla gorilla ENSGGOG00000009597 ortholog_one2one 1 retrogene
retro_ggor_1718,
Loxodonta africana ENSLAFG00000005465 ortholog_one2one 2 retrogenes
retro_lafr_1027, retro_lafr_767,
Macaca mulatta ENSMMUG00000001544 ortholog_one2one 1 retrogene
retro_mmul_901,
Nomascus leucogenys ENSNLEG00000004485 ortholog_one2one 1 retrogene
retro_nleu_1812,
Otolemur garnettii ENSOGAG00000007751 ortholog_one2one 1 retrogene
retro_ogar_3437,
Pan troglodytes ENSPTRG00000006976 ortholog_one2one 2 retrogenes
retro_ptro_1649, retro_ptro_1650,
Rattus norvegicus ENSRNOG00000009143 ortholog_one2many 1 retrogene
retro_rnor_796,
Rattus norvegicus ENSRNOG00000048310 ortholog_one2many 1 retrogene
retro_rnor_1732,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2163 67.98 93.72
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Download FASTA sequences of all ENSG00000180979 retrocopies