Parental gene: | MRPS18C, ENSG00000163319 |
| Aliases: | None |
| Description: | mitochondrial ribosomal protein S18C [Source:HGNC Symbol;Acc:16633] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 4:84377084..84390888(+) |
>ENSG00000163319
ATGGCCGCTGTGGTTGCTGTTTGCGGTGGTCTAGGGAGGAAGAAGTTGACACACTTGGTAACGGCTGCTGTCAGCCTTAC
ACATCCCGGGACTCACACGGTGCTTTGGAGAAGAGGTTGTTCACAACAGGTATCCAGCAATGAGGACCTGCCCATTTCAA
TGGAAAATCCTTATAAAGAACCTCTTAAGAAATGTATCTTGTGTGGAAAGCATGTAGATTATAAGAATGTACAGCTTTTG
TCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAAAGAAAT
CACAAAAGCAATTAAGAGAGCTCAAATAATGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGGACCCTA
AAGTTTGTAACATCAGATATCGGGAATAA
ATGGCCGCTGTGGTTGCTGTTTGCGGTGGTCTAGGGAGGAAGAAGTTGACACACTTGGTAACGGCTGCTGTCAGCCTTAC
ACATCCCGGGACTCACACGGTGCTTTGGAGAAGAGGTTGTTCACAACAGGTATCCAGCAATGAGGACCTGCCCATTTCAA
TGGAAAATCCTTATAAAGAACCTCTTAAGAAATGTATCTTGTGTGGAAAGCATGTAGATTATAAGAATGTACAGCTTTTG
TCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAAAGAAAT
CACAAAAGCAATTAAGAGAGCTCAAATAATGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGGACCCTA
AAGTTTGTAACATCAGATATCGGGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 11 .55 RPM |
| bodymap2_lung | 6 .86 RPM |
| bodymap2_breast | 13 .64 RPM |
| bodymap2_adipose | 9 .86 RPM |
| bodymap2_adrenal | 19 .67 RPM |
| bodymap2_skeletal_muscle | 9 .04 RPM |
| bodymap2_thyroid | 15 .63 RPM |
| bodymap2_prostate | 13 .15 RPM |
| bodymap2_colon | 16 .53 RPM |
| bodymap2_testis | 19 .57 RPM |
| bodymap2_brain | 12 .42 RPM |
| bodymap2_heart | 8 .47 RPM |
| bodymap2_white_blood_cells | 13 .49 RPM |
| bodymap2_lymph_node | 8 .90 RPM |
| bodymap2_ovary | 17 .14 RPM |
| bodymap2_kidney | 17 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000018155 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005286 | possible_ortholog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000009198 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018326 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008603 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000010972 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017057 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000016833 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009119 | ortholog_one2one | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000004113 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025867 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000016233 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006439 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002178 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000007084 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007989 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012505 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012924 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004897 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_969 | 84.42 | 54.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1540 | 71.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2597 | 86.84 | 52.82 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_4019 | 92.75 | 98.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_4684 | 88.73 | 98.59 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000163319 retrocopies