Parental gene:

RPL29, ENSG00000162244

Aliases:RPL29, HIP, HUMRPL29, L29, RPL29P10, RPL29_3_370
Description:ribosomal protein L29 [Source:HGNC Symbol;Acc:10331]
Organism:Human (Homo sapiens)
Coordinates:3:52027615..52029958(-)


>ENSG00000162244
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAACCCCGATCACA
AAGATACGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAAAAGGGCC
TAAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGTGCCGAGGCTATCAAGGCCCTCGTAAAGCCCAAGGAG
GTTAAGCCCAAGATCCCAAAGGGTGTCAGCCGCAAGCTCGATCGACTTGCCTACATTGCCCACCCCAAGCTTGGGAAGCG
TGCTCGTGCCCGTATTGCCAAGGGGCTCAGGCTGTGCCGGCCAAAGGCCAAGGCCAAGGCCAAGGCCAAGGATCAAACCA
AGGCCCAGGCTGCAGCCCCAGCTTCAGTTCCAGCTCAGGCTCCCAAACGTACCCAGGCCCCTACAAAGGCTTCAGAGTAG

Library Parental gene expression (RPM)
bodymap2_liver 120 .41 RPM
bodymap2_lung 323 .61 RPM
bodymap2_breast 226 .07 RPM
bodymap2_adipose 345 .40 RPM
bodymap2_adrenal 368 .49 RPM
bodymap2_skeletal_muscle 419 .30 RPM
bodymap2_thyroid 207 .95 RPM
bodymap2_prostate 379 .29 RPM
bodymap2_colon 351 .62 RPM
bodymap2_testis 194 .98 RPM
bodymap2_brain 44 .84 RPM
bodymap2_heart 82 .58 RPM
bodymap2_white_blood_cells 354 .52 RPM
bodymap2_lymph_node 374 .43 RPM
bodymap2_ovary 388 .74 RPM
bodymap2_kidney 143 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 possible_ortholog 6 retrogenes
retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Callithrix jacchus ENSCJAG00000005951 possible_ortholog 9 retrogenes
retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Gorilla gorilla ENSGGOG00000024691 ortholog_one2one 16 retrogenes
retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus ENSMLUG00000015088 possible_ortholog 14 retrogenes
retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta ENSMMUG00000019248 ortholog_one2many 2 retrogenes
retro_mmul_1352, retro_mmul_218,
Monodelphis domestica ENSMODG00000028750 ortholog_one2many 17 retrogenes
retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Mus musculus ENSMUSG00000048758 possible_ortholog 3 retrogenes
retro_mmus_203, retro_mmus_231, retro_mmus_86,
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
retro_ogar_290, retro_ogar_31,
Ochotona princeps ENSOPRG00000008821 ortholog_one2one 10 retrogenes
retro_opri_1166, retro_opri_277, retro_opri_373, retro_opri_535, retro_opri_607, retro_opri_69, retro_opri_700, retro_opri_877, retro_opri_983, retro_opri_99,
Pongo abelii ENSPPYG00000013818 ortholog_one2one 21 retrogenes
retro_pabe_1062, retro_pabe_1162, retro_pabe_1306, retro_pabe_1503, retro_pabe_1714, retro_pabe_1882, retro_pabe_2125, retro_pabe_2131, retro_pabe_2398, retro_pabe_2718, retro_pabe_2952, retro_pabe_3254, retro_pabe_3284, retro_pabe_3504, retro_pabe_3525, retro_pabe_404, retro_pabe_459, retro_pabe_491, retro_pabe_673, retro_pabe_687, retro_pabe_911,
Rattus norvegicus ENSRNOG00000011138 possible_ortholog 15 retrogenes
retro_rnor_1045, retro_rnor_1158, retro_rnor_1161, retro_rnor_1422, retro_rnor_1702, retro_rnor_184, retro_rnor_1951, retro_rnor_2207, retro_rnor_2222, retro_rnor_2356, retro_rnor_2561, retro_rnor_338, retro_rnor_397, retro_rnor_63, retro_rnor_928,
Sorex araneus ENSSARG00000013572 possible_ortholog 8 retrogenes
retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2one 2 retrogenes
retro_shar_355, retro_shar_444,
Ictidomys tridecemlineatus ENSSTOG00000020488 possible_ortholog 14 retrogenes
retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_123 85.00 100.00
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2. retro_hsap_170 82.50 100.00
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3. retro_hsap_263 83.65 98.74
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4. retro_hsap_863 67.18 81.76
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5. retro_hsap_882 74.21 100.00
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6. retro_hsap_1098 75.97 94.34
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7. retro_hsap_1146 93.08 100.00
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8. retro_hsap_1283 55.56 90.57
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9. retro_hsap_1406 81.25 100.00
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10. retro_hsap_1587 82.50 100.00
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11. retro_hsap_1759 86.79 100.00
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12. retro_hsap_2053 87.34 99.37
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13. retro_hsap_2358 60.18 70.44
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14. retro_hsap_2772 94.97 100.00
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15. retro_hsap_2899 85.53 100.00
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16. retro_hsap_3201 83.12 100.00
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17. retro_hsap_3289 86.16 100.00
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18. retro_hsap_3316 90.57 100.00
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19. retro_hsap_3511 95.60 100.00
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20. retro_hsap_3562 78.69 76.73
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21. retro_hsap_3951 81.88 100.00
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22. retro_hsap_3998 68.55 100.00
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23. retro_hsap_4304 78.02 56.60
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Download FASTA sequences of all ENSG00000162244 retrocopies