Parental gene:

SHQ1, ENSG00000144736

Aliases:SHQ1, Shq1p
Description:SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:25543]
Organism:Human (Homo sapiens)
Coordinates:3:72798427..72911065(-)


>ENSG00000144736
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGATCCGGACTTCCTGACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTC
CGAGTTCGACGTCTACTTCGAGGGGTCTGACTTCAAGTTCTACGCCAAGCCATACTTTCTCAGATTAACCCTTCCTGGAA
GAATTGTAGAAAATGGAAGTGAGCAAGGGTCCTATGATGCAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAGGGGCTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGGACAGCAAAACCACTTGT
GGAAGAAATAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGACGATGAAGAGTTTGATTGGGAAATTGAGCAGACACCCT
GTGAAGAGGTATCAGAAAGTGCTTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTACGATCAGGAGTGTTGCAACGG
TTACAGGATGAACTGAGTGATGTTATTGATATTAAGGATCCAGATTTCACCCCTGCAGCTGAACGAAGACAGAAGCGCCT
GGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGATGAGGCGATTGAACAGATTTTGA
AGTATAATCCTTGGTGGACTGACAAATATTCAAAAATGATGGCCTTTTTGGAAAAGAGTCAGGAACAAGAAAATCATGCT
ACATTAGTGTCTTTTTCTGAAGAAGAGAAGTATCAGCTACGAAAATTTGTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTGCTACAGTTTGATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ATGTTGAATCTGCATGGAATATCAGGAAACTGAGTCCAACACTATGCTGGTTTGAGACTTGGACTAACGTTCATGATATC
ATGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTATCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTGGGTAAAAGTGCAGTTTTAAAGTGTCTCCTGGATATTCACAAAATTTTTCAGGAAAATGACC
CAGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCACT
GCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGACACTTTGCTCCAGCTCTGAGG
CAAGTGATTCGGAGGACTCAGACAGCAGCGTGTCATCTGGAAACGAAGACTCAGGCTCAGATTCAGAACAAGATGAACTC
AAAGATAGTCCATCTGAGACAGTCAGTTCTTTGCAAGGTCCCTTTCTTGAAGAAAGCAGTGCCTTTCTTATTGTTGATGG
TGGAGTACGCAGAAACACAGCCATCCAGGAGTCTGATGCCAGTCAGGGAAAGCCACTTGCCTCTTCCTGGCCTCTTGGAG
TGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACTACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCGCAGCAATATTCAGGAGAGAGACGGCTGTCAGACACCAAATAATTGA

Library Parental gene expression (RPM)
bodymap2_liver 9 .25 RPM
bodymap2_lung 8 .53 RPM
bodymap2_breast 15 .19 RPM
bodymap2_adipose 10 .79 RPM
bodymap2_adrenal 18 .22 RPM
bodymap2_skeletal_muscle 17 .26 RPM
bodymap2_thyroid 23 .90 RPM
bodymap2_prostate 14 .96 RPM
bodymap2_colon 12 .03 RPM
bodymap2_testis 32 .73 RPM
bodymap2_brain 6 .73 RPM
bodymap2_heart 13 .18 RPM
bodymap2_white_blood_cells 24 .63 RPM
bodymap2_lymph_node 14 .00 RPM
bodymap2_ovary 29 .47 RPM
bodymap2_kidney 20 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015131 ortholog_one2one 1 retrogene
retro_cjac_1045,
Gorilla gorilla ENSGGOG00000034818 ortholog_one2one 1 retrogene
retro_ggor_581,
Nomascus leucogenys ENSNLEG00000002731 ortholog_one2one 1 retrogene
retro_nleu_463,
Pongo abelii ENSPPYG00000013717 ortholog_one2one 1 retrogene
retro_pabe_546,
Pan troglodytes ENSPTRG00000015106 ortholog_one2one 1 retrogene
retro_ptro_486,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_674 85.27 99.83
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Download FASTA sequences of all ENSG00000144736 retrocopies