Parental gene:

SHQ1, ENSCJAG00000015131

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:49142996..49243125(-)


>ENSCJAG00000015131
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGAGCCAGACTTCCTAACCATCGCTATCCGCGTGCCCTACGCTCGGATCTC
CGAGTTCGACGTATACTTCGAGGGGTCCGACTTCAAGTTCTACGCAAAGCCGTACTTTCTCAGGTTAACCCTTCCTGGAA
GAATTGTGGGAAATGGAAGCGAGCAAGGGTCCTATGATACAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAAGGACTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGAACGGCAAAACCACTTGT
GGAAGAATTAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGACGATGAAGACTTTGATTGGGAAATTGAGCAGACACCCT
ACGAAGAGGTATCAGAAAGTGCTTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTGCGATCAGGAGTATTTCAGCGG
TTACAGGATGAATTGAGTGATGTTGTTGATATTAAGGATCCAGATTTCACCCCTGCTGTTGAACGAAGACAGAAGCGCCT
GGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGATGAGGCAGTTGAACAGATTTTGC
AGTATAATCCTTGGTGGACTGACATATATTCAAAAATGACGGCCTTTGTGGAAAAGAGTCAGGAGAAAGAAAATCGTGCT
GCATTAGTGTCTTTTTCGGAAGAAGAGAAATATCAGCTAAGAAAATTTCTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTGCTACAGTTTAATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ACGTTGAATCTGCATGGAATATCAGGAAACTGAGTCCAACACTATGCTGGTTTGAGACTTGGACTAATGTTCATGATATC
CTGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTTTCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTAGGTAAAAGTGCAGTTTTAAAGTGTCTCTTGGATATTCACAAAATTTTTCAGGAAAACGACC
CAGCATACATACTGAATGATCTCTACATCTCTGACTACTGTGTGTGGATTCAAAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCGCT
TCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGATACTTTCCTCCAGCTCTGAAG
CAAGTGATTCGGAGGACTCCGACAGTACCGTGTCGTCTGGAAATGAAGACTCAGACTCAGACTCAGAACAAGATGAACCC
AAAGATAGTCCATCTGAAACAGTCAGTTCTTTGCAAGGTTCCTTTCTTGAAGAAAGCAGTGCCCTTCTTATTGTTGATGG
TGGAGTATGCAGAAACACAGCCATCCAGGAGTTTGATGTCAGTCAGGGAAAGCCGCTTGCCTCTTCTCGGCCTCTTGGAC
CGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACCACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCACAGTATGCAGGAGAGAGACAGCTGTCAGACACCAAATAATTGA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .24 RPM
SRP051959_skeletal_muscle 6 .35 RPM
SRP051959_lymph_node 17 .76 RPM
SRP051959_lung 10 .17 RPM
SRP051959_liver 8 .01 RPM
SRP051959_kidney 9 .41 RPM
SRP051959_heart 5 .65 RPM
SRP051959_colon 11 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000144736 ortholog_one2one 1 retrogene
retro_hsap_674,
Gorilla gorilla ENSGGOG00000034818 ortholog_one2one 1 retrogene
retro_ggor_581,
Nomascus leucogenys ENSNLEG00000002731 ortholog_one2one 1 retrogene
retro_nleu_463,
Pongo abelii ENSPPYG00000013717 ortholog_one2one 1 retrogene
retro_pabe_546,
Pan troglodytes ENSPTRG00000015106 ortholog_one2one 1 retrogene
retro_ptro_486,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1045 80.08 84.03
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Download FASTA sequences of all ENSCJAG00000015131 retrocopies