Parental gene: | ATP5F1, ENSG00000116459 |
| Aliases: | None |
| Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 [Source:HGNC Symbol;Acc:840] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:111991485..112005395(+) |
>ENSG00000116459
ATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGGGGT
ATTGCAGGCAACAAGGACCTTTCATACAGGGCAGCCACACCTTGTCCCTGTACCACCTCTTCCTGAATACGGAGGAAAAG
TTCGTTATGGACTGATCCCTGAGGAATTCTTCCAGTTTCTTTATCCTAAAACTGGTGTAACAGGACCCTATGTACTCGGA
ACTGGGCTTATCTTGTACGCTTTATCCAAAGAAATATATGTGATTAGCGCAGAGACCTTCACTGCCCTATCAGTACTAGG
TGTAATGGTCTATGGAATTAAAAAATATGGTCCCTTTGTTGCAGACTTTGCTGATAAACTCAATGAGCAAAAACTTGCCC
AACTAGAAGAGGCGAAGCAGGCTTCCATCCAACACATCCAGAATGCAATTGATACGGAGAAGTCACAACAGGCACTGGTT
CAGAAGCGCCATTACCTTTTTGATGTGCAAAGGAATAACATTGCTATGGCTTTGGAAGTTACTTACCGGGAACGACTGTA
TAGAGTATATAAGGAAGTAAAGAATCGCCTGGACTATCATATATCTGTGCAGAACATGATGCGTCGAAAGGAACAAGAAC
ACATGATAAATTGGGTGGAGAAGCACGTGGTGCAAAGCATCTCCACACAGCAGGAAAAGGAGACAATTGCCAAGTGCATT
GCGGACCTAAAGCTGCTGGCAAAGAAGGCTCAAGCACAGCCAGTTATGTAA
ATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGGGGT
ATTGCAGGCAACAAGGACCTTTCATACAGGGCAGCCACACCTTGTCCCTGTACCACCTCTTCCTGAATACGGAGGAAAAG
TTCGTTATGGACTGATCCCTGAGGAATTCTTCCAGTTTCTTTATCCTAAAACTGGTGTAACAGGACCCTATGTACTCGGA
ACTGGGCTTATCTTGTACGCTTTATCCAAAGAAATATATGTGATTAGCGCAGAGACCTTCACTGCCCTATCAGTACTAGG
TGTAATGGTCTATGGAATTAAAAAATATGGTCCCTTTGTTGCAGACTTTGCTGATAAACTCAATGAGCAAAAACTTGCCC
AACTAGAAGAGGCGAAGCAGGCTTCCATCCAACACATCCAGAATGCAATTGATACGGAGAAGTCACAACAGGCACTGGTT
CAGAAGCGCCATTACCTTTTTGATGTGCAAAGGAATAACATTGCTATGGCTTTGGAAGTTACTTACCGGGAACGACTGTA
TAGAGTATATAAGGAAGTAAAGAATCGCCTGGACTATCATATATCTGTGCAGAACATGATGCGTCGAAAGGAACAAGAAC
ACATGATAAATTGGGTGGAGAAGCACGTGGTGCAAAGCATCTCCACACAGCAGGAAAAGGAGACAATTGCCAAGTGCATT
GCGGACCTAAAGCTGCTGGCAAAGAAGGCTCAAGCACAGCCAGTTATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 96 .64 RPM |
| bodymap2_lung | 71 .20 RPM |
| bodymap2_breast | 96 .44 RPM |
| bodymap2_adipose | 72 .67 RPM |
| bodymap2_adrenal | 98 .15 RPM |
| bodymap2_skeletal_muscle | 107 .09 RPM |
| bodymap2_thyroid | 122 .69 RPM |
| bodymap2_prostate | 128 .01 RPM |
| bodymap2_colon | 114 .82 RPM |
| bodymap2_testis | 129 .26 RPM |
| bodymap2_brain | 125 .71 RPM |
| bodymap2_heart | 320 .80 RPM |
| bodymap2_white_blood_cells | 145 .06 RPM |
| bodymap2_lymph_node | 80 .73 RPM |
| bodymap2_ovary | 100 .22 RPM |
| bodymap2_kidney | 217 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005433 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000006441 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000013353 | ortholog_one2many | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000014070 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000018599 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000010713 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000028321 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005215 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000004809 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011992 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012417 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003313 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000000563 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003971 | ortholog_one2one | 8 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007809 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011486 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000001032 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000001099 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010604 | ortholog_one2one | 3 retrogenes | |
| Sorex araneus | ENSSARG00000002107 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000013185 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007630 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000000420 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000001546 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000000206 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_828 | 76.13 | 85.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1705 | 68.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1951 | 95.27 | 57.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3673 | 73.48 | 70.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3762 | 64.05 | 58.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3812 | 82.03 | 99.61 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000116459 retrocopies