RetrogeneDB ID:

retro_sara_610

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_238723:14582..15180(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5F1
Ensembl ID:ENSSARG00000002107
Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 [Source:HGNC Symbol;Acc:840]


Retrocopy-Parental alignment summary:






>retro_sara_610
GGGCTGATCCCTAAGGAGTTTTTCTGGTTCCTTTATCCAAAAACTGGTGTAACAGGACCCTACGTGCTTGGTACTGGGCT
TATCTTGTATTTCCTATCCAAAGAAATAGATGCGATTACCCCAGACACTTTCTCTGCCATATCAACAATAGGGTTGCTTG
TCTATTTGGTTAAAAAATATGGTGCCTCTGTTGGAGAATTTGCTGATAAACTCAATGAGCAAAAAAAAATCTCCCAACTA
GAAGTGAAACAGGCTTCCATCAAGCAAATCAACGATGGATTGAGATGGAGAAGGCACAGCAGGCACTAGTTCAAAAGCGC
AATACGTTTTTGATGTCCAGAGGAATAACACTGCTATGGCCTGGGAAGTTACTTACCAGGAACGGCTGCATAGAGTACAC
AAGGAGGTGAAGAACCACCTGGACTATCGTATCTCTGTTCAGAATATGATGCGTCGCAAGGAGCAGGAGCACAGGATTAA
CTGGGTAGAGAAGCATGTGGTGCGGAGCATTTCTGCCCAGCAGGAAAAGGAGACAATTGCCAAGTGCATTTCAGATCTAA
AGCTGCTGGCAAAGAAGGCTCGATCACAGCCAGTTATG

ORF - retro_sara_610 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.12 %
Parental protein coverage: 78.12 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGLIPEEFFQFLYPKTGVTGPYVLGTGLILYFLSKEIYVITPDTFSAISTIGLLVYLVKKYGASVGEFADK
GLIP.EFF.FLYPKTGVTGPYVLGTGLILYFLSKEI..ITPDTFSAISTIGLLVYLVKKYGASVGEFADK
RetrocopyGLIPKEFFWFLYPKTGVTGPYVLGTGLILYFLSKEIDAITPDTFSAISTIGLLVYLVKKYGASVGEFADK
ParentalLNEQKIAQLEEVKQASIKQINDA-IEMEKAQQALVQKRH-YLFDVQRNNIAMALEVTYRERLHRVHKEVK
LNE.......EVKQASIKQIND..IEMEKAQQALVQKR..Y.FDVQRNN.AMA.EVTY.ERLHRVHKEVK
RetrocopyLNEXXXXSQLEVKQASIKQINDG<IEMEKAQQALVQKRN<YVFDVQRNNTAMAWEVTYQERLHRVHKEVK
ParentalNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISAQQEKETIAKCISDLKLLAKKAQSQPVM
N.LDY.ISVQNMMRRKEQEH.INWVEKHVV.SISAQQEKETIAKCISDLKLLAKKA.SQPVM
RetrocopyNHLDYRISVQNMMRRKEQEHRINWVEKHVVRSISAQQEKETIAKCISDLKLLAKKARSQPVM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide