Parental gene: | NANOG, ENSG00000111704 |
| Aliases: | None |
| Description: | Nanog homeobox [Source:HGNC Symbol;Acc:20857] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 12:7940389..7948655(+) |
>ENSG00000111704
ATGAGTGTGGATCCAGCTTGTCCCCAAAGCTTGCCTTGCTTTGAAGCATCCGACTGTAAAGAATCTTCACCTATGCCTGT
GATTTGTGGGCCTGAAGAAAACTATCCATCCTTGCAAATGTCTTCTGCTGAGATGCCTCACACGGAGACTGTCTCTCCTC
TTCCTTCCTCCATGGATCTGCTTATTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGCAAACAACCCACTTCTGCA
GAGAAGAGTGTCGCAAAAAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATACCTCAGCCTCCAGCAGATGCAAGAACTCTCCAACATCCTGAACC
TCAGCTACAAACAGGTGAAGACCTGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCGAAG
AATAGCAATGGTGTGACGCAGAAGGCCTCAGCACCTACCTACCCCAGCCTTTACTCTTCCTACCACCAGGGATGCCTGGT
GAACCCGACTGGGAACCTTCCAATGTGGAGCAACCAGACCTGGAACAATTCAACCTGGAGCAACCAGACCCAGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAATCCTGGAACAATCAGGCCTGGAACAGTCCCTTC
TATAACTGTGGAGAGGAATCTCTGCAGTCCTGCATGCAGTTCCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAGCTGCTGGGGAAGGCCTTAATGTAATACAGCAGACCACTAGGTATTTTAGTACTCCACAAACCATGGATTTATTCC
TAAACTACTCCATGAACATGCAACCTGAAGACGTGTGA
ATGAGTGTGGATCCAGCTTGTCCCCAAAGCTTGCCTTGCTTTGAAGCATCCGACTGTAAAGAATCTTCACCTATGCCTGT
GATTTGTGGGCCTGAAGAAAACTATCCATCCTTGCAAATGTCTTCTGCTGAGATGCCTCACACGGAGACTGTCTCTCCTC
TTCCTTCCTCCATGGATCTGCTTATTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGCAAACAACCCACTTCTGCA
GAGAAGAGTGTCGCAAAAAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATACCTCAGCCTCCAGCAGATGCAAGAACTCTCCAACATCCTGAACC
TCAGCTACAAACAGGTGAAGACCTGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCGAAG
AATAGCAATGGTGTGACGCAGAAGGCCTCAGCACCTACCTACCCCAGCCTTTACTCTTCCTACCACCAGGGATGCCTGGT
GAACCCGACTGGGAACCTTCCAATGTGGAGCAACCAGACCTGGAACAATTCAACCTGGAGCAACCAGACCCAGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAATCCTGGAACAATCAGGCCTGGAACAGTCCCTTC
TATAACTGTGGAGAGGAATCTCTGCAGTCCTGCATGCAGTTCCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAGCTGCTGGGGAAGGCCTTAATGTAATACAGCAGACCACTAGGTATTTTAGTACTCCACAAACCATGGATTTATTCC
TAAACTACTCCATGAACATGCAACCTGAAGACGTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 0 .00 RPM |
| bodymap2_lung | 0 .00 RPM |
| bodymap2_breast | 0 .00 RPM |
| bodymap2_adipose | 0 .00 RPM |
| bodymap2_adrenal | 0 .00 RPM |
| bodymap2_skeletal_muscle | 0 .00 RPM |
| bodymap2_thyroid | 0 .00 RPM |
| bodymap2_prostate | 0 .00 RPM |
| bodymap2_colon | 0 .10 RPM |
| bodymap2_testis | 0 .13 RPM |
| bodymap2_brain | 0 .02 RPM |
| bodymap2_heart | 0 .00 RPM |
| bodymap2_white_blood_cells | 0 .00 RPM |
| bodymap2_lymph_node | 0 .00 RPM |
| bodymap2_ovary | 0 .02 RPM |
| bodymap2_kidney | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017064 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013914 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000972 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000002621 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004648 | ortholog_one2many | 8 retrogenes | |
| Felis catus | ENSFCAG00000001621 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000028196 | ortholog_one2one | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000009949 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000002228 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000029325 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000030580 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000032158 | ortholog_one2many | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017979 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016731 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005359 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013783 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000026339 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015460 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004233 | ortholog_one2many | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000029807 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006989 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_722 | 56.59 | 58.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1455 | 88.95 | 62.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1549 | 98.95 | 62.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3713 | 88.83 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_4814 | 87.69 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000111704 retrocopies