RetrogeneDB ID: retro_mputfur_691

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896935.1:3365022..3365697(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NANOG
• Ensembl ID: ENSMPUG00000016731
• Aliases: None
• Description: Nanog homeobox [Source:HGNC Symbol;Acc:20857]

Sequence

>retro_mputfur_691
ATGAGTGTGGGTCCAGCTCAGCTCCAATGCCCACCTGGTCTCAGAGCATCCAATTCTAGGGATTCTTGTCCAGTGCCTGA
GATTTATGGACCTGAAGAACATTATGCATCTTTGCAAATGTCTTCTGCTGAGACACCCTACATGGAGACCATCTCTCCTC
TTTCTTCTTCTATGGATCTGCTTTTCAGGACAGCCCTGATTCTTCAACCAGTCCCAGAGTAAAACTAAGATCCACTTCTG
TAGAGGAGAGCACAGTGAAGAAGGAAGATACCGACCAGTGAAGAAACAGAAGATCAGAACTGCCCTCCCTCAGACCCAGC
TACATGTACTCAGTGAGAGATTTCATGGACAGAAATACCTCAGTCTCCTACAGATGCAAGAACATTCCAACATTCTGAAC
CTTAACTATAATCAGGTTAAGACCTGGTTCCAGAACCAGAGAATGAAGTGTAAGAACAGCAACTGGCCAGAGAATAGCAA
CAGTGTGACTCAGAGCAACTCAACAGCTACAGAACATCCAGGCTTCTCTTCCTGTCACCAGAGATAGCTGATGAACCCTT
CTGGAAACCATCCAATATGGAGGATCAGACCTGGTATAACCCCAATTGGAGCAACCATTCCTGGAACAGTGAGACCTGGT
GTCCCCACACCTGGAATAACCAAGCCTGGAACAAT

Alignment

ORF - retro_mputfur_691 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.79 %
• Parental protein coverage: 73.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSADPAPPQCRSGPRPPGSRDSSPMPEVCRHEENYAFLQMSSAETPHAETVSPLPSSVDLLV-QDSPDSS
          MS..PA..QC..G.R...SRDS.P.PE....EE.YA.LQMSSAETP..ET.SPL.SS.DLL..QDSPDSS
Retrocopy MSVGPAQLQCPPGLRASNSRDSCPVPEIYGPEEHYASLQMSSAETPYMETISPLSSSMDLLF<QDSPDSS

Parental  TSPKVKLPPTSAEERTGRREDTAQ-GKKQKIRTVFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYK
          TSP.VKL..TS.EE.T...EDT.Q..KKQKIRT...QTQL.VL..RF..QKYLSL.QMQE.SNILNL.Y.
Retrocopy TSPRVKLRSTSVEESTVKKEDTDQ<VKKQKIRTALPQTQLHVLSERFHGQKYLSLLQMQEHSNILNLNYN

Parental  QVKTWFQNQRMKCKRWQKNHWPKESKSVTQNSTAATEYPAFYSYHQGHLMNTSANLPIW-SSQTWNNPNW
          QVKTWFQNQRMKCK......WP..S.SVTQ....ATE.P.F.S.HQ..LMN.S.N.PIW...QTW.NPNW
Retrocopy QVKTWFQNQRMKCK---NSNWPENSNSVTQSNSTATEHPGFSSCHQR*LMNPSGNHPIW<EDQTWYNPNW

Parental  SNQTWNSQSWSNHSWNGQSWSN
          SN..WNS..W..H.WN.Q.W.N
Retrocopy SNHSWNSETWCPHTWNNQAWNN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_691 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_691 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 23 parental genes, and 67 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017064	1 retrocopy	retro_amel_354,
Canis familiaris	ENSCAFG00000013914	1 retrocopy	retro_cfam_724,
Choloepus hoffmanni	ENSCHOG00000000972	4 retrocopies	retro_chof_1267, retro_chof_264, retro_chof_794, retro_chof_987,
Callithrix jacchus