Parental gene:

PSMA2, ENSG00000106588

Aliases:PSMA2, HC3, MU, PMSA2, PSC2
Description:proteasome (prosome, macropain) subunit, alpha type, 2 [Source:HGNC Symbol;Acc:9531]
Organism:Human (Homo sapiens)
Coordinates:7:42956459..42971822(-)


>ENSG00000106588
ATGGCGGAGCGCGGGTACAGCTTTTCGCTGACTACATTCAGCCCGTCTGGTAAACTTGTCCAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCGTCCGTGGGAATTAAAGCTGCAAATGGTGTGGTATTAGCAACTGAGAAAAAACAGAAAT
CCATTCTGTATGATGAGCGAAGTGTACACAAAGTAGAACCAATTACCAAGCATATAGGTTTGGTGTACAGTGGCATGGGC
CCCGATTACAGAGTGCTTGTGCACAGAGCTCGAAAACTAGCTCAACAATACTATCTTGTGTACCAAGAACCCATTCCTAC
AGCTCAGCTGGTACAGAGAGTAGCTTCTGTGATGCAAGAATATACTCAGTCAGGTGGTGTTCGTCCATTTGGAGTTTCTT
TACTTATTTGTGGTTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAAGCT
ACAGCAATGGGAAAGAACTATGTGAATGGGAAGACTTTCCTTGAGAAAAGATATAATGAAGATCTGGAACTTGAAGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAAATGACAGAGGATAACATAGAAGTTGGAATCTGCA
ATGAAGCTGGATTTAGGAGGCTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAGCATAA

Library Parental gene expression (RPM)
bodymap2_liver 27 .06 RPM
bodymap2_lung 21 .01 RPM
bodymap2_breast 38 .95 RPM
bodymap2_adipose 17 .51 RPM
bodymap2_adrenal 26 .90 RPM
bodymap2_skeletal_muscle 23 .04 RPM
bodymap2_thyroid 27 .17 RPM
bodymap2_prostate 19 .80 RPM
bodymap2_colon 30 .69 RPM
bodymap2_testis 31 .33 RPM
bodymap2_brain 24 .54 RPM
bodymap2_heart 12 .85 RPM
bodymap2_white_blood_cells 18 .78 RPM
bodymap2_lymph_node 22 .15 RPM
bodymap2_ovary 28 .80 RPM
bodymap2_kidney 34 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009433 possible_ortholog 3 retrogenes
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Bos taurus ENSBTAG00000000990 ortholog_one2many 3 retrogenes
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2many 1 retrogene
retro_chof_893,
Callithrix jacchus ENSCJAG00000007730 ortholog_one2many 4 retrogenes
retro_cjac_1096, retro_cjac_1868, retro_cjac_2583, retro_cjac_852,
Cavia porcellus ENSCPOG00000013134 ortholog_one2many 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2many 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2many 2 retrogenes
retro_etel_1569, retro_etel_2022,
Gorilla gorilla ENSGGOG00000006538 ortholog_one2many 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Macaca mulatta ENSMMUG00000022451 ortholog_one2many 2 retrogenes
retro_mmul_1114, retro_mmul_923,
Mustela putorius furo ENSMPUG00000018145 possible_ortholog 1 retrogene
retro_mputfur_548,
Mus musculus ENSMUSG00000015671 possible_ortholog 4 retrogenes
retro_mmus_1104, retro_mmus_1105, retro_mmus_1215, retro_mmus_1320,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2many 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2many 1 retrogene
retro_ocun_774,
Otolemur garnettii ENSOGAG00000016805 possible_ortholog 1 retrogene
retro_ogar_197,
Ochotona princeps ENSOPRG00000011793 ortholog_one2many 2 retrogenes
retro_opri_135, retro_opri_791,
Pongo abelii ENSPPYG00000017612 ortholog_one2many 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2many 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG00000049920 possible_ortholog 2 retrogenes
retro_rnor_2041, retro_rnor_2769,
Sus scrofa ENSSSCG00000020769 possible_ortholog 3 retrogenes
retro_sscr_1082, retro_sscr_419, retro_sscr_440,
Ictidomys tridecemlineatus ENSSTOG00000013334 ortholog_one2many 1 retrogene
retro_itri_223,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2many 2 retrogenes
retro_tsyr_132, retro_tsyr_246,
Tursiops truncatus ENSTTRG00000005649 ortholog_one2many 1 retrogene
retro_ttru_356,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_908 66.81 94.87
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2. retro_hsap_2199 88.78 86.75
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Download FASTA sequences of all ENSG00000106588 retrocopies