Parental gene:

EIF3L, ENSG00000100129

Aliases:EIF3L, EIF3EIP, EIF3S11, EIF3S6IP, HSPC021, HSPC025, MSTP005
Description:eukaryotic translation initiation factor 3, subunit L [Source:HGNC Symbol;Acc:18138]
Organism:Human (Homo sapiens)
Coordinates:22:38244874..38285414(+)


>ENSG00000100129
ATGTCTTATCCCGCTGATGATTATGAGTCTGAGGCGGCTTATGACCCCTACGCTTATCCCAGCGACTATGATATGCACAC
AGGAGATCCAAAGCAGGACCTTGCTTATGAACGTCAGTATGAACAGCAAACCTATCAGGTGATCCCTGAGGTGATCAAAA
ACTTCATCCAGTATTTCCACAAAACTGTCTCAGATTTGATTGACCAGAAAGTGTATGAGCTACAGGCCAGTCGTGTCTCC
AGTGATGTCATTGACCAGAAGGTGTATGAGATCCAGGACATCTATGAGAACAGCTGGACCAAGCTGACTGAAAGATTCTT
CAAGAATACACCTTGGCCCGAGGCTGAAGCCATTGCTCCACAGGTTGGCAATGATGCTGTCTTCCTGATTTTATACAAAG
AATTATACTACAGGCACATATATGCCAAAGTCAGTGGGGGACCTTCCTTGGAGCAGAGGTTTGAATCCTATTACAACTAC
TGCAATCTCTTCAACTACATTCTTAATGCCGATGGTCCTGCTCCCCTTGAACTACCCAACCAGTGGCTCTGGGATATTAT
CGATGAGTTCATCTACCAGTTTCAGTCATTCAGTCAGTACCGCTGTAAGACTGCCAAGAAGTCAGAGGAGGAGATTGACT
TTCTTCGTTCCAATCCCAAAATCTGGAATGTTCATAGTGTCCTCAATGTCCTTCATTCCCTGGTAGACAAATCCAACATC
AACCGACAGTTGGAGGTATACACAAGCGGAGGTGACCCTGAGAGTGTGGCTGGGGAGTATGGGCGGCACTCCCTCTACAA
AATGCTTGGTTACTTCAGCCTGGTCGGGCTTCTCCGCCTGCACTCCCTGTTAGGAGATTACTACCAGGCCATCAAGGTGC
TGGAGAACATCGAACTGAACAAGAAGAGTATGTATTCCCGTGTGCCAGAGTGCCAGGTCACCACATACTATTATGTTGGG
TTTGCATATTTGATGATGCGTCGTTACCAGGATGCCATCCGGGTCTTCGCCAACATCCTCCTCTACATCCAGAGGACCAA
GAGCATGTTCCAGAGGACCACGTACAAGTATGAGATGATTAACAAGCAGAATGAGCAGATGCATGCGCTGCTGGCCATTG
CCCTCACGATGTACCCCATGCGTATTGATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGACAAGATGTTGCGC
ATGCAGAAAGGTGACCCACAAGTCTATGAAGAACTTTTCAGTTACTCCTGCCCCAAGTTCCTGTCGCCTGTAGTGCCCAA
CTATGATAATGTGCACCCCAACTACCACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGATGAAGTACAGCAGC
AGGCCCAGCTTTCAACCATCCGCAGCTTCCTGAAGCTCTACACCACCATGCCTGTGGCCAAGCTGGCTGGCTTCCTGGAC
CTCACAGAGCAGGAGTTCCGGATCCAGCTTCTTGTCTTCAAACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTC
AGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAGGTTGACTTCTACATTGATAAGGACATGATCCACATCGCGGACACCA
AGGTCGCCAGGCGTTATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAGCTTAATCGAACCCTGAAGAAGATG
GGACAGAGACCTTGA

Library Parental gene expression (RPM)
bodymap2_liver 99 .41 RPM
bodymap2_lung 263 .98 RPM
bodymap2_breast 239 .96 RPM
bodymap2_adipose 295 .88 RPM
bodymap2_adrenal 258 .98 RPM
bodymap2_skeletal_muscle 309 .07 RPM
bodymap2_thyroid 238 .52 RPM
bodymap2_prostate 569 .81 RPM
bodymap2_colon 375 .04 RPM
bodymap2_testis 285 .34 RPM
bodymap2_brain 118 .26 RPM
bodymap2_heart 154 .15 RPM
bodymap2_white_blood_cells 539 .23 RPM
bodymap2_lymph_node 329 .88 RPM
bodymap2_ovary 613 .68 RPM
bodymap2_kidney 164 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005885 ortholog_one2one 2 retrogenes
retro_cpor_1288, retro_cpor_410,
Monodelphis domestica ENSMODG00000019068 ortholog_one2one 3 retrogenes
retro_mdom_1247, retro_mdom_1585, retro_mdom_432,
Otolemur garnettii ENSOGAG00000029444 possible_ortholog 1 retrogene
retro_ogar_1635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1369 85.57 57.75
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Download FASTA sequences of all ENSG00000100129 retrocopies