Parental gene:

TMEM230, ENSG00000089063

Aliases:TMEM230, C20orf30, HSPC274, dJ1116H23.2.1
Description:transmembrane protein 230 [Source:HGNC Symbol;Acc:15876]
Organism:Human (Homo sapiens)
Coordinates:20:5080485..5093749(-)


>ENSG00000089063
ATGCAACCTTGGGCGCTGCCAACCGTGGGCGAGCTCTGGGTGTGCGGGCGGCCTGGCGCGGCGCTCCGATGGAGTCTAGT
TCTGTCGCCCAGGCTGGAGCCCAGTGGTGTGATCTCAGCTCACTGCAATCTCCACCTCCTGGCTTCAAGCGATTCTTCTG
CTTCAGCCTCCCGACTGTGTCAGCGTGTTATGATGCCGTCCCGTACCAACCTGGCTACTGGAATCCCCAGTAGTAAAGTG
AAATATTCAAGGCTCTCCAGCACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAACCCCTCCTAAGATCCCTTATAA
GGCCATCGCACTTGCCACTGTGCTGTTTTTGATTGGCGCCTTTCTCATTATTATAGGCTCCCTCCTGCTGTCAGGCTACA
TCAGCAAAGGGGGGGCAGACCGGGCCGTTCCAGTGCTGATCATTGGCATTCTGGTGTTCCTACCCGGATTTTACCACCTG
CGCATCGCTTACTATGCATCCAAAGGCTACCGTGGTTACTCCTATGATGACATTCCAGACTTTGATGACTAG

Library Parental gene expression (RPM)
bodymap2_liver 78 .22 RPM
bodymap2_lung 82 .81 RPM
bodymap2_breast 156 .36 RPM
bodymap2_adipose 79 .83 RPM
bodymap2_adrenal 87 .36 RPM
bodymap2_skeletal_muscle 63 .60 RPM
bodymap2_thyroid 103 .20 RPM
bodymap2_prostate 145 .89 RPM
bodymap2_colon 102 .17 RPM
bodymap2_testis 85 .42 RPM
bodymap2_brain 64 .23 RPM
bodymap2_heart 61 .99 RPM
bodymap2_white_blood_cells 112 .79 RPM
bodymap2_lymph_node 105 .93 RPM
bodymap2_ovary 84 .39 RPM
bodymap2_kidney 114 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006063 possible_ortholog 2 retrogenes
retro_btau_1079, retro_btau_147,
Choloepus hoffmanni ENSCHOG00000010231 ortholog_one2one 12 retrogenes
retro_chof_1228, retro_chof_1463, retro_chof_1812, retro_chof_2199, retro_chof_2210, retro_chof_2400, retro_chof_253, retro_chof_2584, retro_chof_2661, retro_chof_397, retro_chof_884, retro_chof_996,
Callithrix jacchus ENSCJAG00000021275 ortholog_one2one 2 retrogenes
retro_cjac_3112, retro_cjac_4206,
Erinaceus europaeus ENSEEUG00000014992 ortholog_one2one 1 retrogene
retro_eeur_77,
Loxodonta africana ENSLAFG00000006412 ortholog_one2one 1 retrogene
retro_lafr_1033,
Myotis lucifugus ENSMLUG00000023089 possible_ortholog 2 retrogenes
retro_mluc_1504, retro_mluc_1759,
Macaca mulatta ENSMMUG00000013258 ortholog_one2one 4 retrogenes
retro_mmul_1187, retro_mmul_2386, retro_mmul_2626, retro_mmul_856,
Nomascus leucogenys ENSNLEG00000007719 ortholog_one2one 3 retrogenes
retro_nleu_1256, retro_nleu_199, retro_nleu_723,
Otolemur garnettii ENSOGAG00000001386 ortholog_one2one 2 retrogenes
retro_ogar_1700, retro_ogar_3108,
Pongo abelii ENSPPYG00000010796 ortholog_one2one 3 retrogenes
retro_pabe_3801, retro_pabe_507, retro_pabe_916,
Pan troglodytes ENSPTRG00000013221 ortholog_one2one 4 retrogenes
retro_ptro_3030, retro_ptro_3257, retro_ptro_3258, retro_ptro_413,
Ictidomys tridecemlineatus ENSSTOG00000019378 ortholog_one2many 1 retrogene
retro_itri_35,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_550 77.78 53.01
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2. retro_hsap_783 93.65 68.31
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3. retro_hsap_4890 80.53 60.66
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Download FASTA sequences of all ENSG00000089063 retrocopies