Parental gene:

CXorf56, ENSG00000018610

Aliases:None
Description:chromosome X open reading frame 56 [Source:HGNC Symbol;Acc:26239]
Organism:Human (Homo sapiens)
Coordinates:X:118672111..118699397(-)


>ENSG00000018610
ATGCCGAAAGTAGTGTCTCGGTCAGTAGTCTGCTCTGACACTCGGGACCGGGAGGAATATGACGACGGCGAGAAGCCCCT
CCATGTTTACTACTGTTTGTGCGGCCAGATGGTCCTAGTGCTGGACTGCCAGTTAGAGAAATTGCCCATGAGGCCCCGGG
ACCGGTCCCGTGTGATTGATGCTGCCAAACATGCCCATAAGTTTTGTAACACAGAAGATGAGGAGACTATGTATCTGCGG
AGACCTGAAGGCATTGAACGACAGTACAGGAAGAAATGTGCAAAGTGTGGACTGCCGCTCTTCTACCAATCCCAGCCAAA
GAATGCTCCTGTTACCTTCATTGTGGATGGAGCAGTAGTCAAGTTTGGCCAGGGCTTTGGGAAAACGAACATATATACTC
AGAAACAAGAGCCTCCTAAGAAGGTGATGATGACCAAACGGACCAAAGACATGGGCAAGTTCAGTTCTGTCACCGTGTCT
ACCATTGATGAAGAGGAAGAGGAGATTGAGGCTAGGGAAGTTGCTGACTCATATGCACAGAATGCCAAAGTGATTGAAAA
ACAGCTGGAGCGCAAAGGCATGAGCAAGAGGCGACTGCAAGAGCTGGCTGAATTGGAAGCCAAGAAAGCGAAAATGAAGG
GGACCTTGATTGACAACCAGTTCAAATAA

Library Parental gene expression (RPM)
bodymap2_liver 3 .49 RPM
bodymap2_lung 10 .02 RPM
bodymap2_breast 24 .65 RPM
bodymap2_adipose 17 .95 RPM
bodymap2_adrenal 24 .58 RPM
bodymap2_skeletal_muscle 7 .18 RPM
bodymap2_thyroid 30 .88 RPM
bodymap2_prostate 18 .62 RPM
bodymap2_colon 15 .95 RPM
bodymap2_testis 19 .89 RPM
bodymap2_brain 19 .50 RPM
bodymap2_heart 8 .66 RPM
bodymap2_white_blood_cells 21 .16 RPM
bodymap2_lymph_node 13 .08 RPM
bodymap2_ovary 21 .59 RPM
bodymap2_kidney 18 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005111 possible_ortholog 1 retrogene
retro_cjac_311,
Gorilla gorilla ENSGGOG00000013324 ortholog_one2one 1 retrogene
retro_ggor_2711,
Latimeria chalumnae ENSLACG00000012468 ortholog_one2many 1 retrogene
retro_lcha_59,
Myotis lucifugus ENSMLUG00000015751 ortholog_one2many 1 retrogene
retro_mluc_72,
Macaca mulatta ENSMMUG00000022665 ortholog_one2one 1 retrogene
retro_mmul_2333,
Mus musculus ENSMUSG00000006423 ortholog_one2one 1 retrogene
retro_mmus_1715,
Nomascus leucogenys ENSNLEG00000014862 ortholog_one2one 1 retrogene
retro_nleu_2057,
Otolemur garnettii ENSOGAG00000012474 ortholog_one2one 1 retrogene
retro_ogar_145,
Pongo abelii ENSPPYG00000020670 ortholog_one2many 1 retrogene
retro_pabe_177,
Pan troglodytes ENSPTRG00000022224 possible_ortholog 1 retrogene
retro_ptro_104,
Sorex araneus ENSSARG00000003163 ortholog_one2one 1 retrogene
retro_sara_5,
Sarcophilus harrisii ENSSHAG00000006319 ortholog_one2many 1 retrogene
retro_shar_16,
Ictidomys tridecemlineatus ENSSTOG00000011579 ortholog_one2one 1 retrogene
retro_itri_103,
Tursiops truncatus ENSTTRG00000013101 ortholog_one2one 2 retrogenes
retro_ttru_231, retro_ttru_77,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4044 97.30 100.00
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Download FASTA sequences of all ENSG00000018610 retrocopies