Parental gene:

TUBA4A, ENSFCAG00000027277

Aliases:None
Description:tubulin, alpha 4a [Source:HGNC Symbol;Acc:12407]
Organism:Cat (Felis catus)
Coordinates:C1:203038170..203047477(-)


>ENSFCAG00000027277
ATGCCCTGCGTCCCTGCAGCGGAGATCCGGAGCCCAGAGTGTCGGCTCAAGACCTGGAGCGAAGGGTTAAAGCCCGGGTC
GCCACTCCTAACCCATGCGAGACAGCGTGAATGCATCTCAGTTCATGTGGGGCAAGCAGGTGTCCAGATGGGCAATGCCT
GTTGGGAGCTCTACTGCCTGGAACATGGGATTCAGCCTGATGGGCAGATGCCCAGCGATAAGACCATCGGTGGAGGGGAC
GACTCCTTTACCACCTTCTTCTGTGAAACCGGTGCTGGAAAGCACGTGCCACGGGCAGTGTTTGTGGATCTGGAGCCCAC
TGTGATTGATGAGATCCGAAATGGCCCATACCGGCAGCTCTTCCACCCAGAGCAGCTCATCACTGGGAAGGAGGATGCCG
CCAACAACTACGCCCGTGGTCACTATACCATTGGCAAGGAGATCATTGACCCCGTACTGGACCGGATCCGCAAGCTGTCT
GACCAGTGCACAGGACTTCAGGGCTTCCTGGTGTTCCACAGCTTCGGAGGGGGCACCGGCTCGGGCTTCACCTCACTCCT
GATGGAGCGGCTCTCGGTTGACTACGGCAAGAAATCCAAGCTGGAGTTCTCCATCTACCCCGCCCCCCAGGTGTCCACGG
CCGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCGGACTGTGCCTTCATGGTGGACAAC
GAGGCCATCTATGACATCTGCCGCCGCAACCTGGACATCGAGCGCCCCACCTACACCAACCTCAACCGGCTCATCAGCCA
GATCGTCTCGTCCATCACGGCTTCCCTGCGCTTCGACGGGGCCCTCAACGTGGACCTGACGGAGTTCCAGACCAACCTGG
TGCCCTACCCTCGCATCCACTTCCCCCTGGCCACCTATGCGCCGGTCATCTCTGCAGAGAAGGCCTACCACGAGCAGCTG
TCCGTGGCAGAGATCACCAATGCCTGCTTCGAGCCTGCCAACCAGATGGTGAAGTGCGATCCCCGTCACGGCAAGTACAT
GGCCTGCTGCCTGCTGTACCGCGGAGACGTGGTGCCCAAGGACGTCAACGCCGCCATCGCCGCCATCAAGACCAAGCGCA
GCATTCAGTTCGTGGACTGGTGCCCCACGGGCTTCAAGGTTGGTATCAACTACCAGCCACCCACCGTGGTGCCCGGGGGT
GACCTGGCCAAGGTGCAGCGCGCCGTGTGCATGCTGAGCAACACGACCGCCATCGCCGAGGCCTGGGCCCGCCTGGACCA
CAAGTTCGACCTGATGTATGCCAAGAGGGCCTTTGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGGGAGTTCTCTG
AGGCCCGGGAGGATATGGCTGCCCTGGAGAAGGATTACGAGGAGGTGGGCATCGACTCCTATGAGGACGAGGATGAGGGA
GAAGAATAG

Library Parental gene expression (RPM)
SRP017611_liver 13 .55 RPM
SRP017611_kidney 151 .91 RPM
SRP017611_brain 131 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Dipodomys ordii ENSDORG00000000154 ortholog_one2one 3 retrogenes
retro_dord_460, retro_dord_564, retro_dord_786,
Echinops telfairi ENSETEG00000010296 ortholog_one2one 2 retrogenes
retro_etel_1816, retro_etel_1993,
Felis catus ENSFCAG00000022091 within_species_paralog 2 retrogenes
retro_fcat_1375, retro_fcat_647,
Felis catus ENSFCAG00000024852 within_species_paralog 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000027011 within_species_paralog 1 retrogene
retro_fcat_588,
Felis catus ENSFCAG00000028689 within_species_paralog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Microcebus murinus ENSMICG00000000804 ortholog_one2one 1 retrogene
retro_mmur_103,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pteropus vampyrus ENSPVAG00000010798 ortholog_one2one 1 retrogene
retro_pvam_1019,
Rattus norvegicus ENSRNOG00000003597 ortholog_one2one 1 retrogene
retro_rnor_2819,
Ictidomys tridecemlineatus ENSSTOG00000019497 ortholog_one2one 1 retrogene
retro_itri_203,
Tursiops truncatus ENSTTRG00000010042 ortholog_one2one 1 retrogene
retro_ttru_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_596 73.29 57.26
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Download FASTA sequences of all ENSFCAG00000027277 retrocopies