Parental gene: | PTGR1, ENSFCAG00000004339 |
| Aliases: | None |
| Description: | prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429] |
| Organism: | Cat (Felis catus) |
| Coordinates: | D4:73936638..73960233(-) |
>ENSFCAG00000004339
ATGGTTTATGCTAAGAGCTGGACCCTGAAGAAGCACTTCGAAGGCAGCCCCACTCATGGTAACTTTGAGTTGAAAACAGT
TGAACTCCCACCCTTAAACAATGGAGAGGTCCTGCTGGAAGCTTTGTTCCTCACTGTGGATCCTTACATGAGAGTGGCAG
CCAAAAGATTGAAGGAGGGTGATACGATGATGGGGCAGCAAGTGGCCAGAGTTGTGGAAAGTAAAAACTCAGCCTTCCCA
ACAGGAACTATGGTAGTGGCTTCTTCAGGCTGGACAACTCACTCCATTTCTGATGGGAAAGATCTGGAAAAACTGCCTGC
AGAGTGGCCAGACACATTACCAGTGTCTTTGGCTCTGGGAACAGTTGGCATGACAGGGCTAACAGCCTACTTTGGCCTAC
TTGACATCTGTGGTGTGAAGGGTGGAGAAACAGTGATGGTTAATGCAGCAGCAGGAGCAGTGGGCTCTGCTGTGGGCCAG
ATAGCTAAGCTCAAGGGCTGCAAAGTTGTTGGAGCAGCAGGGTCTGATGAAAAAGTTGCCTACCTTAAAAAGCTTGGATA
TGATGTTGCCTTTAACTACAAAACAGTAGAATCTTTGGAAGAAACTTTGAAAAAAGCCTCTCCTGATGGTTACGATTGTT
ATTTTGATAACGTAGGTGGAGAGTTTTCAAACATTGTTATCCCCCAGATGAAGAAGTTTGGAAGAATTGCTATTTGTGGG
GCCATCTCTGTGTATAATACTACTCGCCCACTTCCCCCAGGCCCACCCCCAGAGAATATCATCTACCAGCAACTCCGCAT
GGAAGGGTTCATTGTCACCCGCTGGCAAGGAGATGTCCGTCAGAAGGCTCTGAAAGACTTGCTGACATGGGTCTTAGAGG
GTAAAATCCAGTACCGTGAATACATCACTGAAGGGTTTGAAAACATGCCAGCTGCGTTTATGGGAATGCTGAAAGGTGAA
AATTTGGGGAAAACAATAGTGAAAGCATAG
ATGGTTTATGCTAAGAGCTGGACCCTGAAGAAGCACTTCGAAGGCAGCCCCACTCATGGTAACTTTGAGTTGAAAACAGT
TGAACTCCCACCCTTAAACAATGGAGAGGTCCTGCTGGAAGCTTTGTTCCTCACTGTGGATCCTTACATGAGAGTGGCAG
CCAAAAGATTGAAGGAGGGTGATACGATGATGGGGCAGCAAGTGGCCAGAGTTGTGGAAAGTAAAAACTCAGCCTTCCCA
ACAGGAACTATGGTAGTGGCTTCTTCAGGCTGGACAACTCACTCCATTTCTGATGGGAAAGATCTGGAAAAACTGCCTGC
AGAGTGGCCAGACACATTACCAGTGTCTTTGGCTCTGGGAACAGTTGGCATGACAGGGCTAACAGCCTACTTTGGCCTAC
TTGACATCTGTGGTGTGAAGGGTGGAGAAACAGTGATGGTTAATGCAGCAGCAGGAGCAGTGGGCTCTGCTGTGGGCCAG
ATAGCTAAGCTCAAGGGCTGCAAAGTTGTTGGAGCAGCAGGGTCTGATGAAAAAGTTGCCTACCTTAAAAAGCTTGGATA
TGATGTTGCCTTTAACTACAAAACAGTAGAATCTTTGGAAGAAACTTTGAAAAAAGCCTCTCCTGATGGTTACGATTGTT
ATTTTGATAACGTAGGTGGAGAGTTTTCAAACATTGTTATCCCCCAGATGAAGAAGTTTGGAAGAATTGCTATTTGTGGG
GCCATCTCTGTGTATAATACTACTCGCCCACTTCCCCCAGGCCCACCCCCAGAGAATATCATCTACCAGCAACTCCGCAT
GGAAGGGTTCATTGTCACCCGCTGGCAAGGAGATGTCCGTCAGAAGGCTCTGAAAGACTTGCTGACATGGGTCTTAGAGG
GTAAAATCCAGTACCGTGAATACATCACTGAAGGGTTTGAAAACATGCCAGCTGCGTTTATGGGAATGCTGAAAGGTGAA
AATTTGGGGAAAACAATAGTGAAAGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 23 .35 RPM |
| SRP017611_kidney | 44 .62 RPM |
| SRP017611_brain | 1 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003000 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000017571 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000006136 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106853 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017487 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011144 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019499 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_1898 | 83.93 | 84.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000004339 retrocopies