Parental gene: | PTGR1, ENSCJAG00000017571 |
| Aliases: | None |
| Description: | prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:155031185..155074337(-) |
>ENSCJAG00000017571
ATGGTTCGTGCTAAGAGATGGACCCTGAAGAAGCACTTCGTTGGCAGTCCTACTAATAGTGACTTTGAGTTGAAGACAGC
TGAGCTCCCACCCTTAAAAAATGGAGAGGTCCTGCTTGAAGCTTTGTTCCTCACTGTGGATCCTTACATGAGAGTGACAG
CCAAAAGATTGAAGGAAGGTGATACAATGATGGGGCAGCAAGTGGCCAGGATTGTGGAAAGTAAAAATGCAGACTTACCA
ACAGGAACTGTTGTACTGGCTTCTTCAGGCTGGACAATGCACTCCATTTCTGATGGGAAAGATCTGGAAAAGCTGCCAAC
AGAGTGGCCAGACACAATACCACTGTCTTTGGCTCTGGGGACAATTGGCATGACAGGCCTGACTGCCTACTTTGGCCTAC
TTGACATCTGTGGTGTGAAGGGTGGAGAAACAGTGATGGTGAATGCAGCATCTGGAGCTGTGGGCTCTGTTGTGGGGCAG
ATTGCAAAGCTCAAGGGCTGCAAGGTTGTTGGAGCAGTAGGGTCTGATGAAAAGGTTGCCTACCTTCAAGAGCTTGGATT
TGATGTTGTCTTTAACTACAAGACAGTAGAGTCTTTGGAAGAAACCTTGAAGAAAGCCTCTCCTGATGGTTATGATTGTT
ATTTTGATAATGTAGGTGGAGAGTTTTCAAACACTGTTATCTCCCAGATGAAGAAATATGGAAGAATTGCCCTATGTGGA
GCCATCTCTACATATAACAGAACTGGCCCACTTCCCCCAGGCCCACCCCCAGAGATTGTTATCTATCAGGAGCTTCGCAT
GGAAGGGTTCACTGTCCTTCGCTGGCAAGGAGATGTCCGCCAAAAAGCTCTAAAGGACTTGCTGAAATGGGTCTCAGAGG
GTAAAATCCAATGCAAGGAATATATCATTGAAGGATTTGAAAATATGCCAGCTGCATTTATGGGAATGCTGAAAGGAGAT
AATTTGGGGAAAACAATAGTGAAAGCATGA
ATGGTTCGTGCTAAGAGATGGACCCTGAAGAAGCACTTCGTTGGCAGTCCTACTAATAGTGACTTTGAGTTGAAGACAGC
TGAGCTCCCACCCTTAAAAAATGGAGAGGTCCTGCTTGAAGCTTTGTTCCTCACTGTGGATCCTTACATGAGAGTGACAG
CCAAAAGATTGAAGGAAGGTGATACAATGATGGGGCAGCAAGTGGCCAGGATTGTGGAAAGTAAAAATGCAGACTTACCA
ACAGGAACTGTTGTACTGGCTTCTTCAGGCTGGACAATGCACTCCATTTCTGATGGGAAAGATCTGGAAAAGCTGCCAAC
AGAGTGGCCAGACACAATACCACTGTCTTTGGCTCTGGGGACAATTGGCATGACAGGCCTGACTGCCTACTTTGGCCTAC
TTGACATCTGTGGTGTGAAGGGTGGAGAAACAGTGATGGTGAATGCAGCATCTGGAGCTGTGGGCTCTGTTGTGGGGCAG
ATTGCAAAGCTCAAGGGCTGCAAGGTTGTTGGAGCAGTAGGGTCTGATGAAAAGGTTGCCTACCTTCAAGAGCTTGGATT
TGATGTTGTCTTTAACTACAAGACAGTAGAGTCTTTGGAAGAAACCTTGAAGAAAGCCTCTCCTGATGGTTATGATTGTT
ATTTTGATAATGTAGGTGGAGAGTTTTCAAACACTGTTATCTCCCAGATGAAGAAATATGGAAGAATTGCCCTATGTGGA
GCCATCTCTACATATAACAGAACTGGCCCACTTCCCCCAGGCCCACCCCCAGAGATTGTTATCTATCAGGAGCTTCGCAT
GGAAGGGTTCACTGTCCTTCGCTGGCAAGGAGATGTCCGCCAAAAAGCTCTAAAGGACTTGCTGAAATGGGTCTCAGAGG
GTAAAATCCAATGCAAGGAATATATCATTGAAGGATTTGAAAATATGCCAGCTGCATTTATGGGAATGCTGAAAGGAGAT
AATTTGGGGAAAACAATAGTGAAAGCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 6 .18 RPM |
| SRP051959_skeletal_muscle | 0 .68 RPM |
| SRP051959_lymph_node | 1 .23 RPM |
| SRP051959_lung | 5 .03 RPM |
| SRP051959_liver | 57 .03 RPM |
| SRP051959_kidney | 25 .45 RPM |
| SRP051959_heart | 3 .02 RPM |
| SRP051959_colon | 158 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003000 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000006136 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000004339 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106853 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017487 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011144 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019499 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1653 | 74.87 | 59.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017571 retrocopies