Parental gene:

ENSEEUG00000006985

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_1298:1379..4320(+)


>ENSEEUG00000006985
ATGTCGAGCAAAAAAGCAAAGACCAAGACCACCAAGAAGCGCCCCCAGCGCGCGACGTCCAACGTCTTCGCCATGTTTGA
CCAGTCTCAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATCGACCAGAACAGAGACGGCTTCATTGACAAGGAGGACT
TGCACGACATGCTCGCTTCCCTAGGGAAGAACCCCACTGACGCATACCTTGACGCCATGATGAATGAGGCCCCGGGCCCC
ATCAACTTCACCATGTTCCTCACGATGTTCGGGGAGAAGCTGAACGGCACCGACCCAGAGGATGTCATCAGAAACGCCTT
CGCTTGCTTTGATGAGGAAGCGACTGGCACCATCCAGGAAGACTACCTGAGGGAGCTGCTGACAACAATGGGCGACCGCT
TCACAGACGAGGAGGTGGACGAGCTGTACCGCGAAGCGCCGATCGACAAAAAGGGCAACTTCAACTACATCGAGTTCACG
CGCATCCTGAAACATGGCGCCAAAGACAAGGACGACTGA

Library Parental gene expression (RPM)
SRP017611_liver 27 .49 RPM
SRP017611_kidney 205 .73 RPM
SRP017611_brain 23 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012665 ortholog_one2many 1 retrogene
retro_amel_1847,
Canis familiaris ENSCAFG00000032168 ortholog_one2many 1 retrogene
retro_cfam_1224,
Dasypus novemcinctus ENSDNOG00000007004 ortholog_one2many 2 retrogenes
retro_dnov_463, retro_dnov_953,
Dipodomys ordii ENSDORG00000007562 ortholog_one2many 1 retrogene
retro_dord_531,
Felis catus ENSFCAG00000022871 ortholog_one2many 1 retrogene
retro_fcat_2019,
Homo sapiens ENSG00000118680 ortholog_one2many 4 retrogenes
retro_hsap_1487, retro_hsap_3129, retro_hsap_3451, retro_hsap_3985,
Gorilla gorilla ENSGGOG00000004051 ortholog_one2many 4 retrogenes
retro_ggor_1139, retro_ggor_1140, retro_ggor_2330, retro_ggor_2675,
Myotis lucifugus ENSMLUG00000005189 ortholog_one2many 2 retrogenes
retro_mluc_706, retro_mluc_947,
Monodelphis domestica ENSMODG00000021464 ortholog_one2many 1 retrogene
retro_mdom_987,
Mustela putorius furo ENSMPUG00000005011 ortholog_one2many 1 retrogene
retro_mputfur_294,
Mus musculus ENSMUSG00000034868 ortholog_one2many 2 retrogenes
retro_mmus_1483, retro_mmus_1539,
Nomascus leucogenys ENSNLEG00000006907 ortholog_one2many 3 retrogenes
retro_nleu_1709, retro_nleu_1906, retro_nleu_2250,
Oryctolagus cuniculus ENSOCUG00000021304 possible_ortholog 1 retrogene
retro_ocun_900,
Otolemur garnettii ENSOGAG00000029777 ortholog_one2many 2 retrogenes
retro_ogar_2409, retro_ogar_857,
Ochotona princeps ENSOPRG00000009826 possible_ortholog 2 retrogenes
retro_opri_342, retro_opri_736,
Pongo abelii ENSPPYG00000009032 ortholog_one2many 3 retrogenes
retro_pabe_1236, retro_pabe_2585, retro_pabe_3026,
Pan troglodytes ENSPTRG00000009836 ortholog_one2many 4 retrogenes
retro_ptro_1006, retro_ptro_2118, retro_ptro_2340, retro_ptro_2705,
Rattus norvegicus ENSRNOG00000015733 ortholog_one2many 2 retrogenes
retro_rnor_1614, retro_rnor_2718,
Tupaia belangeri ENSTBEG00000009299 possible_ortholog 4 retrogenes
retro_tbel_1294, retro_tbel_1629, retro_tbel_3088, retro_tbel_3438,
Tarsius syrichta ENSTSYG00000010418 ortholog_one2many 9 retrogenes
retro_tsyr_1034, retro_tsyr_1265, retro_tsyr_1320, retro_tsyr_1464, retro_tsyr_1961, retro_tsyr_2054, retro_tsyr_277, retro_tsyr_391, retro_tsyr_751,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_311 84.21 98.26
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Download FASTA sequences of all ENSEEUG00000006985 retrocopies