Parental gene:

CBX1, ENSEEUG00000004874

Aliases:None
Description:chromobox homolog 1 [Source:HGNC Symbol;Acc:1551]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_377979:48770..56307(-)


>ENSEEUG00000004874
ATGGGGAAAAAACAGAACAAGAAGAAAGTGGAAGAGGTGCTAGAAGAGGAGGAAGAAGAATATGTGGTGGAAAAAGTTCT
TGACCGTCGAGTGGTAAAAGGAAAAGTGGAATATCTGCTGAAGTGGAAAGGATTCTCAGATGAGGACAACACGTGGGAGC
CAGAAGAAAACCTGGATTGCCCCGACCTCATTGCTGAGTTTCTGCAGTCACAGAAAACAGCACACGAGACAGATAAATCA
GAGGGAGGCAAGCGCAAAGCTGACTCTGATTCTGAAGATAAAGGAGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTC
AGAAAAGCCACGAGGCTTTGCTCGGGGTTTGGAGCCAGAACGAATTATTGGAGCTACAGACTCTAGTGGAGAACTCATGT
TCCTAATGAAATGGAAGAACTCTGATGAGGCTGACCTGGTCCCGGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTT
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCTCTCAGAGGATGATGACAAAAAAGATGACAAGAATTAA

Library Parental gene expression (RPM)
SRP017611_liver 7 .72 RPM
SRP017611_kidney 30 .94 RPM
SRP017611_brain 21 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004890 possible_ortholog 2 retrogenes
retro_amel_1228, retro_amel_54,
Bos taurus ENSBTAG00000002949 ortholog_one2one 9 retrogenes
retro_btau_1121, retro_btau_1394, retro_btau_148, retro_btau_1583, retro_btau_1615, retro_btau_550, retro_btau_558, retro_btau_714, retro_btau_807,
Callithrix jacchus ENSCJAG00000007532 possible_ortholog 2 retrogenes
retro_cjac_191, retro_cjac_51,
Dipodomys ordii ENSDORG00000000716 ortholog_one2one 2 retrogenes
retro_dord_594, retro_dord_709,
Echinops telfairi ENSETEG00000000203 ortholog_one2one 7 retrogenes
retro_etel_1083, retro_etel_1572, retro_etel_1577, retro_etel_1611, retro_etel_2165, retro_etel_382, retro_etel_932,
Felis catus ENSFCAG00000006056 possible_ortholog 1 retrogene
retro_fcat_514,
Myotis lucifugus ENSMLUG00000005030 ortholog_one2one 2 retrogenes
retro_mluc_1000, retro_mluc_1533,
Mus musculus ENSMUSG00000018666 ortholog_one2one 1 retrogene
retro_mmus_3108,
Oryctolagus cuniculus ENSOCUG00000008021 ortholog_one2many 3 retrogenes
retro_ocun_177, retro_ocun_442, retro_ocun_55,
Otolemur garnettii ENSOGAG00000005658 ortholog_one2one 9 retrogenes
retro_ogar_1087, retro_ogar_1092, retro_ogar_1322, retro_ogar_2056, retro_ogar_2396, retro_ogar_2443, retro_ogar_2840, retro_ogar_2880, retro_ogar_368,
Ochotona princeps ENSOPRG00000003699 ortholog_one2one 1 retrogene
retro_opri_552,
Pongo abelii ENSPPYG00000008891 possible_ortholog 1 retrogene
retro_pabe_78,
Rattus norvegicus ENSRNOG00000008689 ortholog_one2one 2 retrogenes
retro_rnor_2388, retro_rnor_2841,
Sarcophilus harrisii ENSSHAG00000008192 ortholog_one2one 1 retrogene
retro_shar_76,
Ictidomys tridecemlineatus ENSSTOG00000023986 ortholog_one2one 3 retrogenes
retro_itri_1282, retro_itri_1599, retro_itri_1867,
Tarsius syrichta ENSTSYG00000004769 ortholog_one2one 2 retrogenes
retro_tsyr_1672, retro_tsyr_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_121 59.57 98.92
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2. retro_eeur_228 67.83 77.30
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3. retro_eeur_396 84.28 85.41
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Download FASTA sequences of all ENSEEUG00000004874 retrocopies