Parental gene:

FUNDC1, ENSECAG00000022709

Aliases:None
Description:FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]
Organism:Horse (Equus caballus)
Coordinates:X:36145840..36158172(-)


>ENSECAG00000022709
ATGGCGACCCGGAACCCCCCTCCCCAAGAATATGAAAGTGATGACGACTCTTACGAAGTGTTGGATTTAACTGAGTATGC
AAGAAGACACCATTGGTGGAATCGAGTGTTTGGCCACAGTTCCGGACCTATGGTAGAAAAATACTCAGTAGCCACTCAGA
TTGTAATGGGTGGAGTGACTGGCTGGTGTGCGGGATTTTTGTTCCAGAAAGTTGGAAAACTTGCAGCAACTGCAGTAGGT
GGTGGCTTTCTTCTCCTTCAGATTGCCAGTCACAGTGGCTATGTGCAGATCGACTGGAAGAGAGTTGAAAAAGATGTAAA
CAAAGCAAAAAGACAGATTAAGAAACGAGCAAATAAGGCAGCACCTGAAATCAACAATATAATTGAGGAAGCAACAGAAT
TTGTCAAACAGAACATTGTGATATCCAGTGGATTTGTGGGAGGCTTTTTGCTGGGCCTTGCATCTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 4 .69 RPM
SRP021940_embryo 6 .29 RPM
SRP021940_cerebellum 17 .45 RPM
SRP021940_testis 2 .69 RPM
SRP021940_placental_villous 3 .42 RPM
SRP021940_articular_cartilage 6 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010258 ortholog_one2one 3 retrogenes
retro_amel_586, retro_amel_644, retro_amel_825,
Bos taurus ENSBTAG00000001637 ortholog_one2one 4 retrogenes
retro_btau_1370, retro_btau_1591, retro_btau_305, retro_btau_587,
Canis familiaris ENSCAFG00000014506 ortholog_one2one 3 retrogenes
retro_cfam_1269, retro_cfam_1675, retro_cfam_951,
Dasypus novemcinctus ENSDNOG00000014551 ortholog_one2one 2 retrogenes
retro_dnov_2091, retro_dnov_2240,
Echinops telfairi ENSETEG00000012763 ortholog_one2one 3 retrogenes
retro_etel_1614, retro_etel_697, retro_etel_852,
Felis catus ENSFCAG00000005541 ortholog_one2one 3 retrogenes
retro_fcat_1493, retro_fcat_179, retro_fcat_205,
Latimeria chalumnae ENSLACG00000010215 ortholog_one2one 1 retrogene
retro_lcha_74,
Macropus eugenii ENSMEUG00000006795 ortholog_one2one 5 retrogenes
retro_meug_1597, retro_meug_2127, retro_meug_232, retro_meug_415, retro_meug_994,
Myotis lucifugus ENSMLUG00000015860 ortholog_one2one 3 retrogenes
retro_mluc_1032, retro_mluc_2302, retro_mluc_2304,
Macaca mulatta ENSMMUG00000003505 possible_ortholog 1 retrogene
retro_mmul_38,
Monodelphis domestica ENSMODG00000021088 ortholog_one2one 3 retrogenes
retro_mdom_1262, retro_mdom_769, retro_mdom_917,
Mustela putorius furo ENSMPUG00000012924 ortholog_one2one 1 retrogene
retro_mputfur_209,
Oryctolagus cuniculus ENSOCUG00000029753 possible_ortholog 5 retrogenes
retro_ocun_1008, retro_ocun_1376, retro_ocun_1567, retro_ocun_27, retro_ocun_314,
Pelodiscus sinensis ENSPSIG00000013793 ortholog_one2one 1 retrogene
retro_psin_30,
Pteropus vampyrus ENSPVAG00000009327 ortholog_one2one 2 retrogenes
retro_pvam_1380, retro_pvam_232,
Sorex araneus ENSSARG00000012878 ortholog_one2one 4 retrogenes
retro_sara_276, retro_sara_367, retro_sara_494, retro_sara_551,
Sarcophilus harrisii ENSSHAG00000000501 ortholog_one2one 1 retrogene
retro_shar_222,
Tursiops truncatus ENSTTRG00000010466 ortholog_one2one 2 retrogenes
retro_ttru_1099, retro_ttru_1735,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_210 71.52 95.48
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2. retro_ecab_231 80.00 95.48
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3. retro_ecab_567 72.79 94.19
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Download FASTA sequences of all ENSECAG00000022709 retrocopies