Parental gene:

RPL27A, ENSECAG00000022469

Aliases:None
Description:ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
Organism:Horse (Equus caballus)
Coordinates:7:78084494..78087075(+)


>ENSECAG00000022469
CCGTCCAGACTGAGGAAGACCCGGAAACTTCGGGGCCACGTGAGTCACGGCCACGGCCGCATCGGCAAGCACCGGAAGCA
CCCGGGAGGCCGGGGTAATGCTGGCGGCATGCATCACCACAGGATCAACTTTGACAAATATCACCCAGGTTACTTTGGGA
AAGTTGGTATGAGGCATTACCACTTAAAGAGGAATCAGAGCTTCTGCCCAACTGTCAACCTTGATAAACTGTGGACCTTG
GTCAGTGAGCAGACACGGGTAAATGCTGCCAAAAACAAGACTGGAGCTGCTCCTATCATTGATGTGGTGCGATCGGGCTA
CTACAAAGTTTTGGGAAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGTAGAAGAGCCGAGG
AGAAGATTAAGGGTGTCGGGGGGGCCTGTGTCCTGGTAGCCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 405 .08 RPM
SRP021940_embryo 458 .93 RPM
SRP021940_cerebellum 315 .59 RPM
SRP021940_testis 235 .38 RPM
SRP021940_placental_villous 308 .92 RPM
SRP021940_articular_cartilage 642 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 ortholog_one2one 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 ortholog_one2one 1 retrogene
retro_cjac_211,
Felis catus ENSFCAG00000008411 ortholog_one2one 13 retrogenes
retro_fcat_1162, retro_fcat_1285, retro_fcat_1305, retro_fcat_1380, retro_fcat_1635, retro_fcat_1761, retro_fcat_1805, retro_fcat_1974, retro_fcat_469, retro_fcat_652, retro_fcat_673, retro_fcat_817, retro_fcat_907,
Loxodonta africana ENSLAFG00000000425 ortholog_one2one 2 retrogenes
retro_lafr_25, retro_lafr_50,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Oryctolagus cuniculus ENSOCUG00000005442 ortholog_one2one 1 retrogene
retro_ocun_12,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Sus scrofa ENSSSCG00000014569 ortholog_one2one 9 retrogenes
retro_sscr_527, retro_sscr_574, retro_sscr_587, retro_sscr_588, retro_sscr_644, retro_sscr_668, retro_sscr_677, retro_sscr_769, retro_sscr_809,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_289 60.14 93.20
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSECAG00000022469 retrocopies