Parental gene:

RPL11, ENSECAG00000021136

Aliases:None
Description:ribosomal protein L11 [Source:HGNC Symbol;Acc:10301]
Organism:Horse (Equus caballus)
Coordinates:2:31250652..31254107(-)


>ENSECAG00000021136
TTGCAGCAGGATCAAGGTGAAAAGGAGAACCCCATGCGGGAGCTGCGTATCCGCAAGCTCTGCCTCAACATCTGCGTCGG
GGAGAGCGGGGACAGGCTGACCCGGGCCGCCAAGGTGCTGGAGCAGCTCACTGGCCAGACCCCGGTGTTCTCCAAAGCTA
GATACACCGTCAGGTCCTTCGGCATCAGGAGAAATGAGAAGATTGCCGTGCACTGCACAGTCCGTGGGGCCAAGGCAGAA
GAAATCTTGGAGAAAGGTCTAAAGGTGCGAGAATACGAGTTAAGAAAAAATAACTTCTCAGATACTGGAAACTTTGGTTT
TGGGATTCAGGAACACATCGACCTGGGGATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTACGTGGTGC
TGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAG
GAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 552 .47 RPM
SRP021940_embryo 592 .49 RPM
SRP021940_cerebellum 267 .24 RPM
SRP021940_testis 263 .77 RPM
SRP021940_placental_villous 363 .00 RPM
SRP021940_articular_cartilage 774 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005058 ortholog_one2one 1 retrogene
retro_acar_165,
Ailuropoda melanoleuca ENSAMEG00000009704 ortholog_one2one 3 retrogenes
retro_amel_1123, retro_amel_1754, retro_amel_234,
Canis familiaris ENSCAFG00000013232 possible_ortholog 2 retrogenes
retro_cfam_1059, retro_cfam_543,
Cavia porcellus ENSCPOG00000008432 ortholog_one2one 2 retrogenes
retro_cpor_261, retro_cpor_788,
Felis catus ENSFCAG00000028651 ortholog_one2one 2 retrogenes
retro_fcat_1069, retro_fcat_1877,
Gorilla gorilla ENSGGOG00000014628 ortholog_one2one 6 retrogenes
retro_ggor_1192, retro_ggor_1325, retro_ggor_1690, retro_ggor_2204, retro_ggor_533, retro_ggor_603,
Macropus eugenii ENSMEUG00000013738 ortholog_one2one 3 retrogenes
retro_meug_488, retro_meug_517, retro_meug_633,
Myotis lucifugus ENSMLUG00000008868 ortholog_one2one 3 retrogenes
retro_mluc_1271, retro_mluc_1345, retro_mluc_2321,
Macaca mulatta ENSMMUG00000002445 ortholog_one2one 3 retrogenes
retro_mmul_2039, retro_mmul_2415, retro_mmul_2462,
Monodelphis domestica ENSMODG00000012828 ortholog_one2one 1 retrogene
retro_mdom_641,
Mus musculus ENSMUSG00000059291 possible_ortholog 3 retrogenes
retro_mmus_144, retro_mmus_146, retro_mmus_78,
Ornithorhynchus anatinus ENSOANG00000000321 ortholog_one2one 1 retrogene
retro_oana_49,
Otolemur garnettii ENSOGAG00000032741 ortholog_one2one 6 retrogenes
retro_ogar_1325, retro_ogar_1935, retro_ogar_1963, retro_ogar_2322, retro_ogar_2630, retro_ogar_569,
Rattus norvegicus ENSRNOG00000026260 possible_ortholog 9 retrogenes
retro_rnor_1735, retro_rnor_2287, retro_rnor_2314, retro_rnor_2690, retro_rnor_271, retro_rnor_2725, retro_rnor_668, retro_rnor_795, retro_rnor_919,
Sarcophilus harrisii ENSSHAG00000006767 ortholog_one2one 1 retrogene
retro_shar_638,
Tursiops truncatus ENSTTRG00000016115 ortholog_one2one 4 retrogenes
retro_ttru_1525, retro_ttru_1779, retro_ttru_476, retro_ttru_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_471 76.40 100.00
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2. retro_ecab_669 71.15 85.96
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3. retro_ecab_926 81.37 57.30
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Download FASTA sequences of all ENSECAG00000021136 retrocopies