Parental gene:

SHFM1, ENSECAG00000018179

Aliases:None
Description:split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845]
Organism:Horse (Equus caballus)
Coordinates:4:39891644..39915574(-)


>ENSECAG00000018179
ATGTCCGAGAAAAAGCAGCCGGTAGACTTGGGTCTCCTGGAGGAGGACGACGAGTTCGAGGAGTTCCCTGCGGAAGACTG
GGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGACTTCTCCA
ATCAGTTACGAGCTGAACTAGAGAAACATGGTTATAAGATGGAAACCTCATAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 27 .34 RPM
SRP021940_embryo 33 .40 RPM
SRP021940_cerebellum 15 .94 RPM
SRP021940_testis 29 .73 RPM
SRP021940_placental_villous 38 .54 RPM
SRP021940_articular_cartilage 25 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010434 ortholog_one2one 1 retrogene
retro_amel_1234,
Erinaceus europaeus ENSEEUG00000002237 ortholog_one2one 2 retrogenes
retro_eeur_290, retro_eeur_586,
Felis catus ENSFCAG00000023254 ortholog_one2one 2 retrogenes
retro_fcat_1138, retro_fcat_121,
Myotis lucifugus ENSMLUG00000014208 ortholog_one2one 1 retrogene
retro_mluc_948,
Oryctolagus cuniculus ENSOCUG00000026246 possible_ortholog 3 retrogenes
retro_ocun_1324, retro_ocun_452, retro_ocun_77,
Sus scrofa ENSSSCG00000015337 possible_ortholog 1 retrogene
retro_sscr_67,
Ictidomys tridecemlineatus ENSSTOG00000011501 ortholog_one2one 1 retrogene
retro_itri_253,
Tupaia belangeri ENSTBEG00000016474 ortholog_one2one 3 retrogenes
retro_tbel_2837, retro_tbel_2998, retro_tbel_3844,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_360 71.83 100.00
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Download FASTA sequences of all ENSECAG00000018179 retrocopies