Parental gene:

HPRT1, ENSECAG00000017534

Aliases:None
Description:hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157]
Organism:Horse (Equus caballus)
Coordinates:X:106897691..106921402(+)


>ENSECAG00000017534
CAGATTAGTGACGATGAACCAGGTTATGACCTAGATTTATTTTGTATACCTAATCATTATGCTGAGGATTTGGAAAAGGT
GTTTATTCCTCATGGAGTAATTATGGACAGGACTGAACGGCTTGCTCGAGATGTGATGAAGGAGATGGGAGGCCATCACA
TTGTAGCACTCTGTGTGCTCAAGGGGGGCTATAAATTCTTTGCTGACCTGCTGGATTATATCAAAGTGTTGAACAGAAAT
AGTGATAGATCCATTCCTATGACTGTAGATTTTATCAGACTGAAGAGCTACTGTAATGACCAGTCAACAGGGGACATAAA
AGTGATTGGTGGAGATGACCTCTCAACTTTAACTGGAAAGGTATGTATCTTTCCCCAGGATATAATTGACACTGGCAAAA
CAATGCAAACCTTGCTTTCCTTGGTCAAGGAGTATAATCCAAAGATGGTCAAGGTCGCAAGCTTGCTGGTGAAAAGGACC
CCTCGAAGTGTTGGATATAGACCAGACTTTGTTGGATTTGAAATTCCAGACAAGTTTGTCGTAGGATATGCCCTTGACTA
TAATGAATACTTCAGGGATTTGAATCACGTTTGTGTCATTAGTGAAACTGGAAAAGAAAAATACAAAGCC

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 5 .85 RPM
SRP021940_embryo 5 .29 RPM
SRP021940_cerebellum 15 .53 RPM
SRP021940_testis 5 .05 RPM
SRP021940_placental_villous 11 .88 RPM
SRP021940_articular_cartilage 2 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001339 possible_ortholog 1 retrogene
retro_amel_129,
Bos taurus ENSBTAG00000014685 ortholog_one2many 3 retrogenes
retro_btau_162, retro_btau_179, retro_btau_721,
Cavia porcellus ENSCPOG00000002512 ortholog_one2one 1 retrogene
retro_cpor_1299,
Dasypus novemcinctus ENSDNOG00000008495 ortholog_one2one 5 retrogenes
retro_dnov_1480, retro_dnov_1908, retro_dnov_2057, retro_dnov_255, retro_dnov_763,
Felis catus ENSFCAG00000004575 possible_ortholog 2 retrogenes
retro_fcat_104, retro_fcat_1608,
Homo sapiens ENSG00000165704 ortholog_one2one 1 retrogene
retro_hsap_917,
Gorilla gorilla ENSGGOG00000008050 ortholog_one2one 1 retrogene
retro_ggor_740,
Loxodonta africana ENSLAFG00000009892 ortholog_one2one 2 retrogenes
retro_lafr_1042, retro_lafr_475,
Microcebus murinus ENSMICG00000006547 ortholog_one2one 1 retrogene
retro_mmur_1186,
Myotis lucifugus ENSMLUG00000003591 ortholog_one2one 1 retrogene
retro_mluc_2107,
Macaca mulatta ENSMMUG00000008303 ortholog_one2one 1 retrogene
retro_mmul_1118,
Oryctolagus cuniculus ENSOCUG00000003186 ortholog_one2one 1 retrogene
retro_ocun_1082,
Otolemur garnettii ENSOGAG00000003881 ortholog_one2one 3 retrogenes
retro_ogar_1886, retro_ogar_3298, retro_ogar_3463,
Pongo abelii ENSPPYG00000020733 ortholog_one2one 2 retrogenes
retro_pabe_3601, retro_pabe_791,
Pan troglodytes ENSPTRG00000022287 ortholog_one2one 2 retrogenes
retro_ptro_2042, retro_ptro_636,
Rattus norvegicus ENSRNOG00000031367 ortholog_one2many 2 retrogenes
retro_rnor_1208, retro_rnor_2491,
Sarcophilus harrisii ENSSHAG00000007965 ortholog_one2one 3 retrogenes
retro_shar_470, retro_shar_513, retro_shar_661,
Tupaia belangeri ENSTBEG00000000859 ortholog_one2one 5 retrogenes
retro_tbel_1607, retro_tbel_2234, retro_tbel_3627, retro_tbel_4320, retro_tbel_729,
Tarsius syrichta ENSTSYG00000009579 ortholog_one2one 1 retrogene
retro_tsyr_2050,
Vicugna pacos ENSVPAG00000009133 ortholog_one2one 1 retrogene
retro_vpac_122,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_734 67.57 69.52
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Download FASTA sequences of all ENSECAG00000017534 retrocopies