Parental gene: | NONO, ENSECAG00000008502 |
| Aliases: | None |
| Description: | non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | X:53146167..53154608(+) |
>ENSECAG00000008502
ATGCAGAGCAATAAAACCTTTAACTTGGAGAAGCAAAACCATACTCCAAGGAAGCATCATCAGCATCACCACCAGCAACA
CCACCAGCAGCAACAGCAGCAGCCACCGCCACCACCCATCCCTGCAAATGGTCAACAAGCCAGCAGCCAAAATGAAGGCT
TGACTATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAACGTAGCCGGCTCTTTGTGGGCAATCTT
CCTCCTGACATCACTGAGGAGGAAATGAGGAAACTATTTGAGAAATATGGGAAGGCAGGCGAAGTCTTCATTCATAAGGA
TAAGGGCTTTGGCTTTATCCGCTTGGAAACACGAACCCTAGCGGAGATTGCCAAAGTGGAGCTGGACAACATGCCACTCC
GTGGAAAGCAGCTGCGTGTGCGCTTTGCCTGCCATAGTGCATCCCTTACTGTCCGAAACCTTCCTCAGTATGTGTCCAAC
GAACTGCTAGAGGAAGCCTTTTCTGTGTTCGGCCAGGTGGAGAGGGCTGTAGTCATTGTGGATGATCGAGGAAGGCCCTC
AGGAAAAGGCATCGTTGAATTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGATAGATGCAGTGAAGGCTCCTTCCTGC
TAACCACATTTCCTCGGCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGATGAAGAGGGACTTCCAGAGAAGCTGGTT
ATAAAGAACCAGCAATTTCACAAGGAGCGAGAGCAGCCACCAAGATTTGCACAGCCTGGCTCCTTTGAGTATGAGTATGC
CATGCGCTGGAAGGCACTCATTGAGATGGAGAAGCAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAAGCGCGTGAGA
AGCTGGAGATGGAGATGGAGGCTGCTCGCCATGAGCACCAGGTCATGCTGATGAGGCAGGATTTGATGAGGCGCCAAGAA
GAACTTCGGAGGATGGAAGAGCTGCACAACCAAGAAGTGCAAAAGCGAAAGCAGCTGGAGCTCAGGCAGGAGGAGGAGCG
CAGGCGCCGGGAGGAAGAGATGCGACGACAACAGGAAGAAATGATGCGGCGACAGCAGGAAGGATTCAAGGGAACCTTCC
CTGATGCGAGAGAGCAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATAAACAACAGAGGCGCCATG
CCCCCTGCTCCTGTGCCAGCTGGTACCCCAGCTCCTCCAGGACCTGCTACTATGATGCCAGATGGAACCTTGGGATTGAC
CCCACCAACAACTGAACGCTTTGGTCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTGGAACCCCTCCTGCGTTCA
ACCGTGCAGCTCCTGGAGCTGAATTTGCTCCGAACAAACGTCGCCGATACTAA
ATGCAGAGCAATAAAACCTTTAACTTGGAGAAGCAAAACCATACTCCAAGGAAGCATCATCAGCATCACCACCAGCAACA
CCACCAGCAGCAACAGCAGCAGCCACCGCCACCACCCATCCCTGCAAATGGTCAACAAGCCAGCAGCCAAAATGAAGGCT
TGACTATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAACGTAGCCGGCTCTTTGTGGGCAATCTT
CCTCCTGACATCACTGAGGAGGAAATGAGGAAACTATTTGAGAAATATGGGAAGGCAGGCGAAGTCTTCATTCATAAGGA
TAAGGGCTTTGGCTTTATCCGCTTGGAAACACGAACCCTAGCGGAGATTGCCAAAGTGGAGCTGGACAACATGCCACTCC
GTGGAAAGCAGCTGCGTGTGCGCTTTGCCTGCCATAGTGCATCCCTTACTGTCCGAAACCTTCCTCAGTATGTGTCCAAC
GAACTGCTAGAGGAAGCCTTTTCTGTGTTCGGCCAGGTGGAGAGGGCTGTAGTCATTGTGGATGATCGAGGAAGGCCCTC
AGGAAAAGGCATCGTTGAATTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGATAGATGCAGTGAAGGCTCCTTCCTGC
TAACCACATTTCCTCGGCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGATGAAGAGGGACTTCCAGAGAAGCTGGTT
ATAAAGAACCAGCAATTTCACAAGGAGCGAGAGCAGCCACCAAGATTTGCACAGCCTGGCTCCTTTGAGTATGAGTATGC
CATGCGCTGGAAGGCACTCATTGAGATGGAGAAGCAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAAGCGCGTGAGA
AGCTGGAGATGGAGATGGAGGCTGCTCGCCATGAGCACCAGGTCATGCTGATGAGGCAGGATTTGATGAGGCGCCAAGAA
GAACTTCGGAGGATGGAAGAGCTGCACAACCAAGAAGTGCAAAAGCGAAAGCAGCTGGAGCTCAGGCAGGAGGAGGAGCG
CAGGCGCCGGGAGGAAGAGATGCGACGACAACAGGAAGAAATGATGCGGCGACAGCAGGAAGGATTCAAGGGAACCTTCC
CTGATGCGAGAGAGCAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATAAACAACAGAGGCGCCATG
CCCCCTGCTCCTGTGCCAGCTGGTACCCCAGCTCCTCCAGGACCTGCTACTATGATGCCAGATGGAACCTTGGGATTGAC
CCCACCAACAACTGAACGCTTTGGTCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTGGAACCCCTCCTGCGTTCA
ACCGTGCAGCTCCTGGAGCTGAATTTGCTCCGAACAAACGTCGCCGATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 189 .47 RPM |
| SRP021940_embryo | 573 .37 RPM |
| SRP021940_cerebellum | 234 .47 RPM |
| SRP021940_testis | 81 .21 RPM |
| SRP021940_placental_villous | 159 .01 RPM |
| SRP021940_articular_cartilage | 96 .87 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016057 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000012152 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017071 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000036744 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000014807 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000147140 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006194 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000000232 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002489 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004937 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031311 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001278 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000021848 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004834 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000020451 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022010 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000016503 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003689 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000007959 | ortholog_one2one | 2 retrogenes | |
| Drosophila melanogaster | FBgn0004227 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_357 | 74.68 | 66.60 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_427 | 74.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000008502 retrocopies