Parental gene: | RWDD1, ENSECAG00000006587 |
| Aliases: | None |
| Description: | RWD domain containing 1 [Source:HGNC Symbol;Acc:20993] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 10:65069009..65087368(+) |
>ENSECAG00000006587
ATGACAGATTACGGTGAGGAGCAGCGCAACGAGCTGGAGGCTCTGGAGTCCATCTACCCTGACTCCTTCACAGTATTATC
AGAAAATCCACCCAGCTTTACCATTACTGTGACCTCTGAGGCTGGAGAAAATGATGAAACTGTCCAGACTACCCTCAAGT
TTACATACAGTGAAAAATACCCAGACGAAGCCCCCCTTTATGAAATATTCTCCCAGGAAAATCTAGAAGATAATGATGTC
TCAGACATTTTAAAATTACTAGCATTACAGGCAGAAGAAAACCTTGGTATGGTGATGATTTTTACTTTAGTGACAGCTGT
GCAAGAAAAATTAAATGAAATAGTAGATCAGATAAAAACCAGAAGAGAAGAAGAAAAGAAACAGAAAGAAAAAGAAGCAG
AAGAAGCTGAAAAGCAATTATTTCATGGCACTCCTGTTACAATTGAGAATTTCTTAAGTTGGAAGGCCAAGTTTGATGCA
GAACTCTTGGAAATTAAAAAGAAACGAATGAAAGAAGAAGAACAAGCAGGAAAAAATAAATTAAGTGGGAAACAGCTGTT
TGAAACAGATCATAATCTTGACACATCAGATATCCAGTTCTTGGAGGATGCTGGAAACAATGTGGAGGTAGATGAGTCTT
TGTTCCAGGAAATGGATGACTTGGAGCTGGAAGATGATGAGGATGATCCAGACTACAATCCTGCCGACCCAGAGAGTGAC
TTGACTGACTAA
ATGACAGATTACGGTGAGGAGCAGCGCAACGAGCTGGAGGCTCTGGAGTCCATCTACCCTGACTCCTTCACAGTATTATC
AGAAAATCCACCCAGCTTTACCATTACTGTGACCTCTGAGGCTGGAGAAAATGATGAAACTGTCCAGACTACCCTCAAGT
TTACATACAGTGAAAAATACCCAGACGAAGCCCCCCTTTATGAAATATTCTCCCAGGAAAATCTAGAAGATAATGATGTC
TCAGACATTTTAAAATTACTAGCATTACAGGCAGAAGAAAACCTTGGTATGGTGATGATTTTTACTTTAGTGACAGCTGT
GCAAGAAAAATTAAATGAAATAGTAGATCAGATAAAAACCAGAAGAGAAGAAGAAAAGAAACAGAAAGAAAAAGAAGCAG
AAGAAGCTGAAAAGCAATTATTTCATGGCACTCCTGTTACAATTGAGAATTTCTTAAGTTGGAAGGCCAAGTTTGATGCA
GAACTCTTGGAAATTAAAAAGAAACGAATGAAAGAAGAAGAACAAGCAGGAAAAAATAAATTAAGTGGGAAACAGCTGTT
TGAAACAGATCATAATCTTGACACATCAGATATCCAGTTCTTGGAGGATGCTGGAAACAATGTGGAGGTAGATGAGTCTT
TGTTCCAGGAAATGGATGACTTGGAGCTGGAAGATGATGAGGATGATCCAGACTACAATCCTGCCGACCCAGAGAGTGAC
TTGACTGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 15 .07 RPM |
| SRP021940_embryo | 21 .99 RPM |
| SRP021940_cerebellum | 11 .84 RPM |
| SRP021940_testis | 36 .90 RPM |
| SRP021940_placental_villous | 16 .26 RPM |
| SRP021940_articular_cartilage | 10 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005692 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000009689 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004474 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019085 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000008170 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017837 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013592 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000005016 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000020231 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000022124 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002543 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_216 | 55.36 | 68.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_277 | 59.73 | 88.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000006587 retrocopies