Parental gene: | TPM3, ENSDNOG00000019156 |
| Aliases: | None |
| Description: | tropomyosin 3 [Source:HGNC Symbol;Acc:12012] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_3814:77..14192(-) |
>ENSDNOG00000019156
ATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGCTGGACAAGGAGAATGCTCTGGATCGGGCAGAGCAAGCTGA
AGCTGAGCAGAAACAGGCAGAAGAAAGAAGTAAACAGTTGGAAGATGAGCTGGCAGCCATGCAGAAAAAGCTGAAAGGAA
CAGAGGATGAGCTGGACAAATATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAGAAGGCAGCT
GATGCTGAAGCTGAGGTGGCCTCCTTGAACCGTCGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCT
GGCCACTGCCCTGCAAAAGCTGGAGGAGGCAGAGAAAGCTGCTGATGAGAGCGAGAGAGGTATGAAGGTTATTGAAAATC
GAGCTTTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGAT
CGGAAGTACGAGGAGGTGGCTCGTAAATTGGTGATTATTGAAGGGGACTTCCGCACTGAGGAACGAGCTGAGCTGGCAGA
GTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTGCGGAGAAG
ATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGCTGGACAAGGAGAATGCTCTGGATCGGGCAGAGCAAGCTGA
AGCTGAGCAGAAACAGGCAGAAGAAAGAAGTAAACAGTTGGAAGATGAGCTGGCAGCCATGCAGAAAAAGCTGAAAGGAA
CAGAGGATGAGCTGGACAAATATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAGAAGGCAGCT
GATGCTGAAGCTGAGGTGGCCTCCTTGAACCGTCGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCT
GGCCACTGCCCTGCAAAAGCTGGAGGAGGCAGAGAAAGCTGCTGATGAGAGCGAGAGAGGTATGAAGGTTATTGAAAATC
GAGCTTTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGAT
CGGAAGTACGAGGAGGTGGCTCGTAAATTGGTGATTATTGAAGGGGACTTCCGCACTGAGGAACGAGCTGAGCTGGCAGA
GTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTGCGGAGAAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 82 .84 RPM |
| SRP012922_cerebellum | 22 .27 RPM |
| SRP012922_heart | 3 .71 RPM |
| SRP012922_kidney | 15 .33 RPM |
| SRP012922_liver | 12 .07 RPM |
| SRP012922_lung | 59 .56 RPM |
| SRP012922_quadricep_muscle | 2754 .12 RPM |
| SRP012922_spleen | 42 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011877 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000033217 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000017311 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000007279 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000010942 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000012596 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000143549 | ortholog_one2one | 9 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013331 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010805 | ortholog_one2one | 10 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007875 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000027940 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000011821 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_329 | 53.74 | 67.92 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_451 | 58.93 | 51.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_848 | 61.94 | 61.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_878 | 65.44 | 63.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_944 | 59.76 | 76.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_1322 | 80.09 | 98.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_1767 | 56.83 | 64.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000019156 retrocopies