Parental gene: | GTF3C6, ENSDNOG00000014270 |
| Aliases: | None |
| Description: | general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:20872] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_15829:48642..56404(+) |
>ENSDNOG00000014270
ATGGCGGCGGCAGAGGAGCGAGGTCGGGATGGTGGCGAGGAGGAGGAAGAACAATTGGTTCTGATGGAATTGTCAGGAAT
TATTGACTCAGACTTTCTCTCAAAATGTGAAAATAAATGCAAGATTTTGGGAATTGACACTGAGAGGCCCATTCTACAAA
TGGACAGCTATGTGTTTGCTGGGGAGTATGAAGACACACTTGGGACCTGTGTTATCTTTGAAGAAAATGTGGAACATGTG
GATGCAGAAGGCAATAATAAAACAGTGCTAAAATATAAATACCATACAATGAAGAAGCTCAGCATGACAAGAACTCTTCT
GACAGAAAAGAAGGAAGGAGAAGAAAACATTGGTGGTGTGGAGTGGCTGCAAATTAAAGATAATGATTTCTCCTATAGAC
CCAACATGATCTGTAGCTTTATACATGAAAATGAAGATGAAGAAGTTGTAGCTCCAGCTGCAGATAAACCTTTGGAGTTG
GAAGAGCAAGAGATTCAAATGAAAGACAATTCAAACCTGAATTACGAACAGGGGAAACCACTGCACTTGGAAATAGAGGA
TTCTGGTCCTCTTATTGATATCCCTTCTTCTGAGACAGAAGATTTTGTTTTGATGGAAACTCAAATGCTGCCTTAG
ATGGCGGCGGCAGAGGAGCGAGGTCGGGATGGTGGCGAGGAGGAGGAAGAACAATTGGTTCTGATGGAATTGTCAGGAAT
TATTGACTCAGACTTTCTCTCAAAATGTGAAAATAAATGCAAGATTTTGGGAATTGACACTGAGAGGCCCATTCTACAAA
TGGACAGCTATGTGTTTGCTGGGGAGTATGAAGACACACTTGGGACCTGTGTTATCTTTGAAGAAAATGTGGAACATGTG
GATGCAGAAGGCAATAATAAAACAGTGCTAAAATATAAATACCATACAATGAAGAAGCTCAGCATGACAAGAACTCTTCT
GACAGAAAAGAAGGAAGGAGAAGAAAACATTGGTGGTGTGGAGTGGCTGCAAATTAAAGATAATGATTTCTCCTATAGAC
CCAACATGATCTGTAGCTTTATACATGAAAATGAAGATGAAGAAGTTGTAGCTCCAGCTGCAGATAAACCTTTGGAGTTG
GAAGAGCAAGAGATTCAAATGAAAGACAATTCAAACCTGAATTACGAACAGGGGAAACCACTGCACTTGGAAATAGAGGA
TTCTGGTCCTCTTATTGATATCCCTTCTTCTGAGACAGAAGATTTTGTTTTGATGGAAACTCAAATGCTGCCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 9 .14 RPM |
| SRP012922_cerebellum | 14 .71 RPM |
| SRP012922_heart | 9 .28 RPM |
| SRP012922_kidney | 4 .38 RPM |
| SRP012922_liver | 7 .28 RPM |
| SRP012922_lung | 9 .01 RPM |
| SRP012922_quadricep_muscle | 6 .92 RPM |
| SRP012922_spleen | 14 .99 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003535 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005248 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000155115 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010681 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013919 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012709 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000017924 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010179 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012846 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000018502 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_377 | 67.63 | 79.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_931 | 64.86 | 69.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1228 | 79.89 | 82.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_1654 | 74.87 | 90.52 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000014270 retrocopies