Parental gene:

TDG, ENSDNOG00000013722

Aliases:None
Description:thymine-DNA glycosylase [Source:HGNC Symbol;Acc:11700]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_7187:16020..36875(+)


>ENSDNOG00000013722
GGAAGCGCGGCGCGCAAGGGGGGTCTTGGGAGGGTAGGAGCTGGGAGGAGCTTGAGCCCAGCTACGGTGTCAGTTCTTCC
AGCAGTCGGGCCCAAGTCTCTGGTATTGTCGTACGGCCGCCACGCTGTCGTAGTACAGAGACCAATCACTCATTTACCAC
GCCGGCAGCAGGAAATGGAAGCGGAGAACGCGGGCAGCTATTCTCTTCAGCAAGCTCAAGCTTTTTATACGTTTCCATTT
CAACAAATGATGCCTGAAGTTTCTAATATGGAAATCATGGAAGAACAACAAATGCCAGCAGAAGTTCCAGTCCCACCTCC
TGCTCAGGAACCTGTACAAGAAGTTCCAAAAAGAAGGAAAAGAAAACCTAGGACAACAGAACCAAAAAAAACAGCGGAAC
CCAAAAGCCCTGCTGAGCCAAAAAAATCTGGCAAGTCCACAAAGTCAAAAGAAAAACAAGAAAAAATTACAGATACATTT
AAAGTGAAAAGAAAAGTAGACCGTTTTAATGGTGTTTCAGAAGCTGAACTTCTGACCAAGACGCTCCCTGATATTTTGAC
CTTCAATTTGGACATTGTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGAAATGTCTGTTTATGTCAGGGCTGAGTGAGGTCCAGCTGAATCATATGGATGATCATACTTTACCA
GGGAAGTATGGTATTGGATTTACCAACATGGTGGAAAGGACAACCCCAGGCAGTAAGGATCTTTCCAGTAAAGAATTTCG
TGAAGGAGGACGTATTCTGGTGCAGAAATTACAGAAATATCAGCCACGAATAGCGGTGTTTAATGGAAAATGTATTTATG
AAATTTTTAGTAAAGAAGTTTTTGGAGTAAAGGTTAAGAACTTAGAATTTGGGCTTCAACCCCATAAGATTCCAGACACA
GAAACTCTCTGCTATGTTATGCCATCATCCAGTGCAAGATGTGCTCAGTTTCCTCGTGCCCAGGACAAAGTTCATTACTA
CATTAAGCTGAAGGACTTAAGGGATCAGTTGAAAGGCATTGAACGAAACACAGACGTTCAGGAGGTGCAATATACATTTG
ACCTACAGCTTGCCCAAGAGGATGCAAAGAAGATGGCGGTTAAGGAAGAAAAATATGATCCGGGTTATGAAGCAGCATAT
GGTGGTGCTTATGGCGAAAATCCATGCAATAGTGAACCTTGCAGCTTCTCTTCAAATGGACTAACTGACAGTGCACAGTT
AAGTAGAGAATCAACTTTCAGTGACATTCCAAATGGGCAGTGGATGACCCAGCCGTTTACAGACCAGATTCCAGCCTTTA
ATAATCATTGTGGGACGCCAGAACAGGAAGAAGGAAGCCATGCTTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 36 .56 RPM
SRP012922_cerebellum 30 .93 RPM
SRP012922_heart 15 .08 RPM
SRP012922_kidney 9 .58 RPM
SRP012922_liver 40 .87 RPM
SRP012922_lung 50 .70 RPM
SRP012922_quadricep_muscle 28 .56 RPM
SRP012922_spleen 46 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000019930 ortholog_one2many 1 retrogene
retro_etel_2184,
Homo sapiens ENSG00000139372 ortholog_one2one 1 retrogene
retro_hsap_980,
Loxodonta africana ENSLAFG00000003813 ortholog_one2one 1 retrogene
retro_lafr_460,
Mus musculus ENSMUSG00000034674 ortholog_one2one 4 retrogenes
retro_mmus_1125, retro_mmus_1363, retro_mmus_3040, retro_mmus_637,
Oryctolagus cuniculus ENSOCUG00000016313 ortholog_one2one 1 retrogene
retro_ocun_1289,
Rattus norvegicus ENSRNOG00000027124 ortholog_one2many 1 retrogene
retro_rnor_2286,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1749 76.19 52.56
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Download FASTA sequences of all ENSDNOG00000013722 retrocopies