Parental gene:

PFN1, ENSDNOG00000011649

Aliases:None
Description:profilin 1 [Source:HGNC Symbol;Acc:8881]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1665:4654..5369(-)


>ENSDNOG00000011649
CCAGCTGAGGTTGGTGTCCTGGTTGGCAAAGACCGGTCAGGTCTTTTCGTGAATGGGCTGACACTTGGGGGCCAGAAATG
TTCTGTGATCCGGGACTCACTGCTGCAGGATGGAGAATTTACCATGGATCTTCGTACTAAGAGCACTGGTGGAGCTCCTA
CCTTCAACCTCACTGTCACCATGACTGCCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NACAAGGAATGTTATGAAATGGCCTCCCACCTGCGACGTTCCCAGTACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 68 .84 RPM
SRP012922_cerebellum 7 .29 RPM
SRP012922_heart 9 .75 RPM
SRP012922_kidney 22 .45 RPM
SRP012922_liver 17 .18 RPM
SRP012922_lung 39 .40 RPM
SRP012922_quadricep_muscle 6 .58 RPM
SRP012922_spleen 63 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006193 ortholog_one2many 2 retrogenes
retro_amel_1712, retro_amel_1781,
Bos taurus ENSBTAG00000004915 possible_ortholog 1 retrogene
retro_btau_141,
Equus caballus ENSECAG00000021116 possible_ortholog 3 retrogenes
retro_ecab_171, retro_ecab_28, retro_ecab_559,
Nomascus leucogenys ENSNLEG00000017446 possible_ortholog 6 retrogenes
retro_nleu_16, retro_nleu_1870, retro_nleu_2425, retro_nleu_2429, retro_nleu_848, retro_nleu_886,
Otolemur garnettii ENSOGAG00000031395 possible_ortholog 3 retrogenes
retro_ogar_1680, retro_ogar_2143, retro_ogar_3351,
Pelodiscus sinensis ENSPSIG00000004124 ortholog_one2one 1 retrogene
retro_psin_8,
Rattus norvegicus ENSRNOG00000003975 possible_ortholog 1 retrogene
retro_rnor_1623,
Tursiops truncatus ENSTTRG00000001299 possible_ortholog 1 retrogene
retro_ttru_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_485 61.54 94.79
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2. retro_dnov_1762 69.23 94.79
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Download FASTA sequences of all ENSDNOG00000011649 retrocopies