Parental gene: | CDV3, ENSDNOG00000010208 |
| Aliases: | None |
| Description: | CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_7299:74141..88787(+) |
>ENSDNOG00000010208
GATGAAGATGAGTGGAAAGAATTTGAGCAAAAAGAGGTTGATTACAGCGGCCTCCGAGTTCAGGCAATGCAAATAAGTAG
TGAAAAGGAAGAAGATGATAATGAAAAGAGAGAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGTGGTG
TAGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTGTGGTACAAGCACCTCCTGCTCCAGTAATTGTTACAGAAACCCCA
GAACCGGCGATGACTAGCGGTGTGTATAGGCCTCCTGGGGCCCGGTTAACCACAACAAGGAAAACACCGCAAGGACCACC
AGAGATATACAGCGATACACAGTTCCCGTCCCTGCAGTCCACTGCCAAGCATGCAGAGAGCCGGAAGGATAAAGAAATGG
AGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGGTAGGGATGAGGTTCCAAAAAACCAGGCCCTTAAACTTCAGCTA
GACAACCAGTATGCTGTGCTTGAAAATCAGAAAAGCAGCCACACACAGTACAATTAA
GATGAAGATGAGTGGAAAGAATTTGAGCAAAAAGAGGTTGATTACAGCGGCCTCCGAGTTCAGGCAATGCAAATAAGTAG
TGAAAAGGAAGAAGATGATAATGAAAAGAGAGAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGTGGTG
TAGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTGTGGTACAAGCACCTCCTGCTCCAGTAATTGTTACAGAAACCCCA
GAACCGGCGATGACTAGCGGTGTGTATAGGCCTCCTGGGGCCCGGTTAACCACAACAAGGAAAACACCGCAAGGACCACC
AGAGATATACAGCGATACACAGTTCCCGTCCCTGCAGTCCACTGCCAAGCATGCAGAGAGCCGGAAGGATAAAGAAATGG
AGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGGTAGGGATGAGGTTCCAAAAAACCAGGCCCTTAAACTTCAGCTA
GACAACCAGTATGCTGTGCTTGAAAATCAGAAAAGCAGCCACACACAGTACAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 26 .64 RPM |
| SRP012922_cerebellum | 13 .47 RPM |
| SRP012922_heart | 38 .29 RPM |
| SRP012922_kidney | 30 .67 RPM |
| SRP012922_liver | 20 .28 RPM |
| SRP012922_lung | 23 .67 RPM |
| SRP012922_quadricep_muscle | 48 .46 RPM |
| SRP012922_spleen | 33 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000035556 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008963 | ortholog_one2one | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002998 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000015689 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000091527 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000027821 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009864 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000032803 | ortholog_one2one | 10 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003470 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000012748 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000003600 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025898 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015409 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011637 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014910 | ortholog_one2many | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011401 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_460 | 64.76 | 57.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_496 | 74.05 | 72.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_656 | 66.67 | 81.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_2359 | 69.91 | 61.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_2616 | 97.86 | 78.09 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000010208 retrocopies