Parental gene:

LSM5, ENSDNOG00000008121

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_9902:129484..133260(-)


>ENSDNOG00000008121
ATGGCTGCTAACGCGACTACTAACCCGTCGCAGCTACTGCCGCTAGAGCTTGTGGATAAGTGTATAGGATCAAGAATTCA
CATTGTAATGAAGAGTGATAAAGAAATTGTTGGTACGCTTCTAGGATTCGACGACTTTGTCAATATGGTACTGGAAGATG
TCACCGAGTTTGAAATCACACCAGAAGGAAGGAGGATTACTAAATTAGATGAGATGCTAAATGGAAATAATATAACAATG
CTGGTTCCTGGAGGAGAAGGACCTGAAGTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 7 .58 RPM
SRP012922_cerebellum 5 .09 RPM
SRP012922_heart 6 .26 RPM
SRP012922_kidney 3 .83 RPM
SRP012922_liver 2 .94 RPM
SRP012922_lung 9 .16 RPM
SRP012922_quadricep_muscle 2 .77 RPM
SRP012922_spleen 11 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Pongo abelii ENSPPYG00000017661 possible_ortholog 1 retrogene
retro_pabe_3449,
Rattus norvegicus ENSRNOG00000042126 possible_ortholog 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Ictidomys tridecemlineatus ENSSTOG00000012662 ortholog_one2one 4 retrogenes
retro_itri_1199, retro_itri_188, retro_itri_222, retro_itri_415,
Tarsius syrichta ENSTSYG00000006449 ortholog_one2one 9 retrogenes
retro_tsyr_1022, retro_tsyr_1080, retro_tsyr_1579, retro_tsyr_181, retro_tsyr_1837, retro_tsyr_1863, retro_tsyr_1963, retro_tsyr_577, retro_tsyr_96,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1836 86.81 100.00
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Download FASTA sequences of all ENSDNOG00000008121 retrocopies