Parental gene:

SRSF7, ENSDNOG00000007821

Aliases:None
Description:serine/arginine-rich splicing factor 7 [Source:HGNC Symbol;Acc:10789]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_28958:3905..9335(-)


>ENSDNOG00000007821
TCGCGTTACGGGCGGTACGGGGGAGAGACCAAGGTGTATGTTGGTAACCTGGGAACTGGTGCTGGCAAAGGAGAGTTAGA
AAGGGCTTTCAGTTATTATGGTCCGTTAAGAACTGTGTGGATTGCGAGAAATCCTCCAGGATTTGCCTTTGTGGAATTTG
AAGATCCCAGAGATGCAGAAGATGCTGTGCGAGGACTGGATGGGAAGGTGATCTGTGGTTCACGAGTGAGAGTTGAGCTA
TCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCTAATGATAGATGCTATGA
GTGTGGTGAAAAGGGACATTATGCTTATGATTGTCATCGCTATAGCCGACGGCGAAGGAGCAGCTCACGGTCTAGATCGC
ATTCAAGATCCAGACGAAGGCGATATTCTCGCTCACGCAGCAGGAGCAGAGGACGGAGATCAAGATCTGTGTCTCTCCGT
AGGTCGAGATCTGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAAAAGGATCGAGGTATTTCCAGTCCCGTTCAAGGTC
AAGGTCAAGATCCAGGTCTATATCACGACCAAGGAGCAGCCGGTCAAAGTCCAGATCACCATCTCCAAAAAGAAGTCGTT
CCCCATCAGGAAGTCCACGCAGAAGTGCAAGTCCTGAAAGAATAGACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 90 .43 RPM
SRP012922_cerebellum 65 .99 RPM
SRP012922_heart 19 .49 RPM
SRP012922_kidney 50 .38 RPM
SRP012922_liver 63 .63 RPM
SRP012922_lung 124 .16 RPM
SRP012922_quadricep_muscle 14 .37 RPM
SRP012922_spleen 130 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015988 ortholog_one2one 1 retrogene
retro_amel_1025,
Canis familiaris ENSCAFG00000029620 ortholog_one2one 1 retrogene
retro_cfam_652,
Dasypus novemcinctus ENSDNOG00000000421 within_species_paralog 9 retrogenes
retro_dnov_1326, retro_dnov_1513, retro_dnov_1702, retro_dnov_1951, retro_dnov_2153, retro_dnov_2328, retro_dnov_2491, retro_dnov_569, retro_dnov_784,
Dasypus novemcinctus ENSDNOG00000012598 other_paralog 2 retrogenes
retro_dnov_1555, retro_dnov_2648,
Macropus eugenii ENSMEUG00000016459 ortholog_one2many 1 retrogene
retro_meug_1048,
Myotis lucifugus ENSMLUG00000009536 ortholog_one2many 2 retrogenes
retro_mluc_2005, retro_mluc_972,
Monodelphis domestica ENSMODG00000008669 ortholog_one2many 1 retrogene
retro_mdom_289,
Mus musculus ENSMUSG00000024097 ortholog_one2one 1 retrogene
retro_mmus_3288,
Otolemur garnettii ENSOGAG00000010169 ortholog_one2one 2 retrogenes
retro_ogar_3467, retro_ogar_3481,
Rattus norvegicus ENSRNOG00000027360 ortholog_one2many 11 retrogenes
retro_rnor_1535, retro_rnor_1977, retro_rnor_1984, retro_rnor_2419, retro_rnor_2420, retro_rnor_2421, retro_rnor_2495, retro_rnor_2501, retro_rnor_2502, retro_rnor_2503, retro_rnor_478,
Sarcophilus harrisii ENSSHAG00000015970 ortholog_one2many 1 retrogene
retro_shar_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_317 53.73 57.64
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2. retro_dnov_829 56.12 60.26
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Download FASTA sequences of all ENSDNOG00000007821 retrocopies