Parental gene:

PSMA3, ENSDNOG00000004077

Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1140:8106..34675(+)


>ENSDNOG00000004077
ATGAGTTCCATCGGCACTGGGTATGACCTGTCGGCCTCTACATTCTCTCCTGATGGGAGAGTTTTTCAAGTTGAATATGC
TATGAAGGCTGTGGAAAATAGTAGTACAGCTATTGGAATCAGATGTAAAGATGGTGTTGTCTTCGGAGTAGAAAAATTAG
TCCTTTCTAAACTTTATGAAGAAGGTTCCAACAAACGGCTTTTTAATGTTGATCGGCATGTTGGAATGGCAGTGGCAGGT
TTGTTGGCAGATGCTCGTTCTTTAGCAGACATAGCAAGAGAAGAAGCTTCCAACTTTAGATCTAACTTTGGCTATAACAT
TCCACTCAAACATCTTGCAGACAGAGTGGCCATGTATGTTCATGCCTATACACTCTACAGTGCTGTTAGACCTTTTGGAT
GCAGTTTCATGTTAGGGTCTTACAGTGTGAATGATGGTGCACAACTCTACATGATTGATCCATCGGGTGTTTCATATGGT
TATTGGGGCTGTGCCATTGGTAAAGCCAGGCAAGCTGCAAAGACAGAAATTGAAAAGCTTCAGATGAAAGAAATGACCTG
TCGTGATGTTGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGATGAAGTTAAAGATAAAGCGTTTGAACTAGAGC
TCAGCTGGGTTGGTGAATTAACTAAAGGAAGACATGAAATTGTTCCAAAAGATATAAGGGAAGAAGCAGAGAAATATGCT
AAGGAATCTTTGAAGGAGGAAGATGAATCTGATGATAATAATATGTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 46 .09 RPM
SRP012922_cerebellum 24 .19 RPM
SRP012922_heart 32 .72 RPM
SRP012922_kidney 42 .71 RPM
SRP012922_liver 30 .81 RPM
SRP012922_lung 32 .53 RPM
SRP012922_quadricep_muscle 33 .41 RPM
SRP012922_spleen 43 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015287 ortholog_one2one 1 retrogene
retro_cfam_1331,
Callithrix jacchus ENSCJAG00000018732 ortholog_one2many 1 retrogene
retro_cjac_3974,
Dipodomys ordii ENSDORG00000002167 ortholog_one2one 1 retrogene
retro_dord_402,
Homo sapiens ENSG00000100567 ortholog_one2one 1 retrogene
retro_hsap_1348,
Gorilla gorilla ENSGGOG00000015814 ortholog_one2one 1 retrogene
retro_ggor_1049,
Macaca mulatta ENSMMUG00000003509 ortholog_one2one 2 retrogenes
retro_mmul_2187, retro_mmul_564,
Monodelphis domestica ENSMODG00000007839 ortholog_one2one 1 retrogene
retro_mdom_544,
Mustela putorius furo ENSMPUG00000006126 ortholog_one2one 2 retrogenes
retro_mputfur_1549, retro_mputfur_414,
Mus musculus ENSMUSG00000060073 ortholog_one2one 3 retrogenes
retro_mmus_1277, retro_mmus_1463, retro_mmus_2810,
Nomascus leucogenys ENSNLEG00000013092 ortholog_one2one 1 retrogene
retro_nleu_1831,
Oryctolagus cuniculus ENSOCUG00000010316 ortholog_one2one 1 retrogene
retro_ocun_667,
Otolemur garnettii ENSOGAG00000000382 ortholog_one2one 2 retrogenes
retro_ogar_1764, retro_ogar_2857,
Ochotona princeps ENSOPRG00000002835 ortholog_one2one 2 retrogenes
retro_opri_67, retro_opri_991,
Pongo abelii ENSPPYG00000005855 ortholog_one2one 2 retrogenes
retro_pabe_1120, retro_pabe_339,
Pan troglodytes ENSPTRG00000006390 ortholog_one2one 1 retrogene
retro_ptro_923,
Rattus norvegicus ENSRNOG00000007851 ortholog_one2many 1 retrogene
retro_rnor_183,
Sorex araneus ENSSARG00000002670 ortholog_one2one 2 retrogenes
retro_sara_437, retro_sara_573,
Ictidomys tridecemlineatus ENSSTOG00000013539 ortholog_one2one 1 retrogene
retro_itri_1317,
Tupaia belangeri ENSTBEG00000016910 ortholog_one2one 1 retrogene
retro_tbel_1947,
Tursiops truncatus ENSTTRG00000013526 ortholog_one2one 1 retrogene
retro_ttru_545,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_198 94.12 100.00
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2. retro_dnov_447 76.35 56.86
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3. retro_dnov_765 88.89 98.43
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4. retro_dnov_992 90.37 52.94
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5. retro_dnov_1089 91.41 63.53
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6. retro_dnov_1115 93.21 63.53
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7. retro_dnov_1156 90.45 85.88
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8. retro_dnov_1240 89.39 51.37
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9. retro_dnov_1252 91.37 100.00
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10. retro_dnov_1285 87.16 100.00
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11. retro_dnov_1347 94.20 87.84
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12. retro_dnov_1473 86.71 61.57
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13. retro_dnov_1542 93.83 63.53
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14. retro_dnov_1604 88.89 88.24
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15. retro_dnov_1650 91.80 99.61
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16. retro_dnov_1662 92.70 53.33
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17. retro_dnov_1783 86.77 100.00
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18. retro_dnov_1785 91.25 62.35
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19. retro_dnov_1791 88.89 98.43
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20. retro_dnov_1880 85.60 100.00
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21. retro_dnov_1896 88.72 100.00
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22. retro_dnov_2030 88.15 82.35
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23. retro_dnov_2125 85.71 51.37
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24. retro_dnov_2128 90.74 63.53
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25. retro_dnov_2334 66.27 63.92
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26. retro_dnov_2507 86.77 100.00
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27. retro_dnov_2578 91.76 99.61
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Download FASTA sequences of all ENSDNOG00000004077 retrocopies