RetrogeneDB - Parental gene ENSDNOG00000000209 details

							
>ENSDNOG00000000209
ATGGCCAAGTCCAAGAACCACACCACACACAACCAATCTCGAAAATGGCACAGAAATGGCATCAAGAAGCCCAGATCACA

AAGATATGAATCTCTTAAAGGGGTGGACCCCAAGTTCTTGAGGAACATGCGCTTTGCCAAGAAGCACAATAAGAAGGGCC

TGAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGTGCAGAGGCCATCAAGGCCCTCGTAAAGCCCAAGGAG

GTCAAGCCCAAGATCCCAAAGAGTGGCAGCCGCAAGCTCAATCGACTTGCCTACATTGCCCACCCTAAGCTTGGGAAGCG

TGCTCGTGCCCGCATTGCCAAGGGTCTCAGACTCTCCCGACCAAAGTCCAAGGCCAAGGATCAAACCAAGGCCCAGGCTG

CGGCTCCAGCTCAGGCTACTGCTCCTGGTCAGGCTCCCAAAGGTGCCCAGGCCCCCACGAAGGCGCCTGAGTAG

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	568 .82 RPM
SRP012922_cerebellum	277 .27 RPM
SRP012922_heart	282 .61 RPM
SRP012922_kidney	740 .34 RPM
SRP012922_liver	394 .29 RPM
SRP012922_lung	733 .69 RPM
SRP012922_quadricep_muscle	404 .84 RPM
SRP012922_spleen	802 .83 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009163	possible_ortholog	6 retrogenes	retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Callithrix jacchus	ENSCJAG00000005951	possible_ortholog	9 retrogenes	retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Equus caballus	ENSECAG00000007397	ortholog_one2one	2 retrogenes	retro_ecab_766, retro_ecab_904,
Felis catus	ENSFCAG00000001762	ortholog_one2one	9 retrogenes	retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Gorilla gorilla	ENSGGOG00000024691	possible_ortholog	16 retrogenes	retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Microcebus murinus	ENSMICG00000002705	ortholog_one2one	9 retrogenes	retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus	ENSMLUG00000015088	possible_ortholog	14 retrogenes	retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta	ENSMMUG00000019248	possible_ortholog	2 retrogenes	retro_mmul_1352, retro_mmul_218,
Monodelphis domestica	ENSMODG00000028750	ortholog_one2many	17 retrogenes	retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo	ENSMPUG00000011734	ortholog_one2many	6 retrogenes	retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Mus musculus	ENSMUSG00000048758	possible_ortholog	3 retrogenes	retro_mmus_203, retro_mmus_231, retro_mmus_86,
Otolemur garnettii	ENSOGAG00000013766	ortholog_one2many	2 retrogenes	retro_ogar_290, retro_ogar_31,
Pongo abelii	ENSPPYG00000013818	possible_ortholog	21 retrogenes	retro_pabe_1062, retro_pabe_1162, retro_pabe_1306, retro_pabe_1503, retro_pabe_1714, retro_pabe_1882, retro_pabe_2125, retro_pabe_2131, retro_pabe_2398, retro_pabe_2718, retro_pabe_2952, retro_pabe_3254, retro_pabe_3284, retro_pabe_3504, retro_pabe_3525, retro_pabe_404, retro_pabe_459, retro_pabe_491, retro_pabe_673, retro_pabe_687, retro_pabe_911,
Rattus norvegicus	ENSRNOG00000011138	possible_ortholog	15 retrogenes	retro_rnor_1045, retro_rnor_1158, retro_rnor_1161, retro_rnor_1422, retro_rnor_1702, retro_rnor_184, retro_rnor_1951, retro_rnor_2207, retro_rnor_2222, retro_rnor_2356, retro_rnor_2561, retro_rnor_338, retro_rnor_397, retro_rnor_63, retro_rnor_928,
Sorex araneus	ENSSARG00000013572	possible_ortholog	8 retrogenes	retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii	ENSSHAG00000006854	ortholog_one2one	2 retrogenes	retro_shar_355, retro_shar_444,
Ictidomys tridecemlineatus	ENSSTOG00000020488	possible_ortholog	14 retrogenes	retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_1743	51.14	54.14	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_1900	77.70	92.99	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_1923	67.36	88.54	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_1952	79.25	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_2050	67.16	82.17	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_2163	81.01	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_2614	66.04	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000000209 retrocopies

Parental gene:	RPL29, ENSDNOG00000000209
Aliases:	None
Description:	ribosomal protein L29 [Source:HGNC Symbol;Acc:10331]
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	scaffold_26395:24734..26862(+)

Parental gene:

RPL29, ENSDNOG00000000209