Parental gene:

ENSCPOG00000022006

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:58919817..58933404(-)


>ENSCPOG00000022006
ATGGCGGCCTCGACGGCGTCGCACCGGCCCATCAAGGGGATCCTGAAGAACAAGACCGCTGCGACTTCCTCGGTGGTGGC
CTCGGCCGAAGAACCCCGCCGGAGCGTGGACGAGGAGCTGAGTAAAAAATCCCAGAAGTGGGATGAAATGAACATCCTGG
CAACCTATCATCCAGCTGACAAAGACTATGGTTTGATGAAAATAGATGAACCAAGCACTCCTTTCCATAGTATGATAGGT
GATGATGAAGACGCAGTTAGTGATTCTGAAGCCACTGAGCCCCTAACTCCAGATGTCTTAGCTAAGAAATTGGCTGCTGC
TGAAGGCTCAGAGCTGAAGTATCAGATTCGGGAACAAGAAAGCAGTGGAGAAGAGGATAATGATCTCTCACCAGAAGAGC
GAGAAAAAAAGCGACAATTTGAAATGAAAAGGAAGCTTCACTACAATGAAGGACTGAATATTAAGTTAGCTAGACAATTA
ATTTCAAAAGACTTACATGATGAGGAGGAAGACGAAGAAATGTCAGCAACTGCAGATGGCGAAAAAATGAATATTGAAGA
ATCAAAGCAAGGATCTACTACAGGTGATCAACGGCAAAACAAATCACAAAATTCATAG

Library Parental gene expression (RPM)
SRP017611_liver 17 .80 RPM
SRP017611_kidney 40 .93 RPM
SRP017611_brain 46 .88 RPM
SRP040447_lung 31 .30 RPM
SRP040447_skeletal_muscle 39 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009410 ortholog_one2many 2 retrogenes
retro_amel_1164, retro_amel_53,
Canis familiaris ENSCAFG00000032648 ortholog_one2many 1 retrogene
retro_cfam_44,
Choloepus hoffmanni ENSCHOG00000013210 ortholog_one2many 2 retrogenes
retro_chof_1353, retro_chof_2148,
Callithrix jacchus ENSCJAG00000013876 ortholog_many2many 2 retrogenes
retro_cjac_1252, retro_cjac_2429,
Dasypus novemcinctus ENSDNOG00000023619 ortholog_one2many 1 retrogene
retro_dnov_1698,
Equus caballus ENSECAG00000018050 ortholog_one2many 1 retrogene
retro_ecab_3,
Felis catus ENSFCAG00000024749 ortholog_one2many 1 retrogene
retro_fcat_55,
Homo sapiens ENSG00000184203 ortholog_one2many 7 retrogenes
retro_hsap_1262, retro_hsap_1271, retro_hsap_2303, retro_hsap_2505, retro_hsap_3258, retro_hsap_3576, retro_hsap_3800,
Gorilla gorilla ENSGGOG00000025908 ortholog_many2many 5 retrogenes
retro_ggor_1563, retro_ggor_1705, retro_ggor_2412, retro_ggor_2554, retro_ggor_992,
Loxodonta africana ENSLAFG00000012010 ortholog_one2many 1 retrogene
retro_lafr_85,
Macaca mulatta ENSMMUG00000019396 ortholog_many2many 2 retrogenes
retro_mmul_1314, retro_mmul_1666,
Mustela putorius furo ENSMPUG00000003753 ortholog_one2many 2 retrogenes
retro_mputfur_1269, retro_mputfur_172,
Mus musculus ENSMUSG00000047714 ortholog_one2many 8 retrogenes
retro_mmus_1540, retro_mmus_1610, retro_mmus_1611, retro_mmus_1868, retro_mmus_2760, retro_mmus_3350, retro_mmus_3428, retro_mmus_3580,
Nomascus leucogenys ENSNLEG00000008371 ortholog_one2many 6 retrogenes
retro_nleu_123, retro_nleu_1435, retro_nleu_1943, retro_nleu_2147, retro_nleu_2315, retro_nleu_2740,
Oryctolagus cuniculus ENSOCUG00000014123 ortholog_one2many 2 retrogenes
retro_ocun_188, retro_ocun_942,
Otolemur garnettii ENSOGAG00000002597 ortholog_one2many 1 retrogene
retro_ogar_10,
Procavia capensis ENSPCAG00000013614 ortholog_one2many 1 retrogene
retro_pcap_397,
Pongo abelii ENSPPYG00000014429 ortholog_many2many 6 retrogenes
retro_pabe_105, retro_pabe_1056, retro_pabe_1979, retro_pabe_3025, retro_pabe_3105, retro_pabe_96,
Pteropus vampyrus ENSPVAG00000011638 ortholog_one2many 1 retrogene
retro_pvam_18,
Rattus norvegicus ENSRNOG00000001733 ortholog_one2many 2 retrogenes
retro_rnor_245, retro_rnor_2860,
Sus scrofa ENSSSCG00000011830 ortholog_many2many 1 retrogene
retro_sscr_1191,
Sus scrofa ENSSSCG00000030455 ortholog_many2many 1 retrogene
retro_sscr_1161,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_82 51.74 83.90
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2. retro_cpor_1144 75.38 94.15
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Download FASTA sequences of all ENSCPOG00000022006 retrocopies