Parental gene:

CACYBP, ENSCPOG00000012682

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_12:9131860..9137433(-)


>ENSCPOG00000012682
TTTCCTTCTGTTTCAACACAGCTGCAGAATGATCTAGAAGAGGTAAAGACGTTGCTGGAAAAGGCTACTAGGAAGAGAGT
TCGTGATGCCCTGACAGCTGAAAAATGCAAGATTGAAACAGAAATAAAGAATAAGATGCAACAGAAGTCACAAAAGAAAC
CAGAACTTCATGACAGTGAAAAACCAGCTGCTGTGGTTGCTCCCATCACAACAGGATACACAGTGAAAATCAGTAATTAC
GGTTGGGATCAGTCAGACAAGTTTGTGAAAATCTACATTACCTTAACTGGAGTTCATCAAGTTCCTGCTGAGAATGTACA
GGTGTATTTCACAGAAAGGTCATTTGATCTTTTGGTAAAGAACTTAAATGGGAAAAGTTATTCTATGATTGTGAACAATC
TTTTGAAACCCATCTCAGTGGAAGGCAGTTCGAAAAAAATCAAGACTGATACAGTTCTTATCTTGTGTAGAAAGAAAGCG
GAAAATGTTCAGTGGGAGTACTTAACTCAGGTTGAAAAAGAGTGCAAAGAAAAAGAAAAGCCATCCTACGATGCTGAGAC
AGATCCTAGTGAGGGGTTAATGAACGTTCTAAAGAAAATTTATGAAGATGGAGATGATGATATGAAGCGAACTATTAATA
AGGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGCGACACAGAATTTTGA

Library Parental gene expression (RPM)
SRP017611_liver 36 .34 RPM
SRP017611_kidney 41 .98 RPM
SRP017611_brain 43 .89 RPM
SRP040447_lung 34 .43 RPM
SRP040447_skeletal_muscle 35 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000170 ortholog_one2many 4 retrogenes
retro_amel_1094, retro_amel_1760, retro_amel_571, retro_amel_975,
Bos taurus ENSBTAG00000001107 ortholog_one2one 1 retrogene
retro_btau_1122,
Canis familiaris ENSCAFG00000029016 ortholog_one2one 1 retrogene
retro_cfam_1724,
Callithrix jacchus ENSCJAG00000008989 ortholog_one2one 4 retrogenes
retro_cjac_2432, retro_cjac_3336, retro_cjac_964, retro_cjac_975,
Dasypus novemcinctus ENSDNOG00000015629 ortholog_one2one 1 retrogene
retro_dnov_915,
Dipodomys ordii ENSDORG00000001870 ortholog_one2one 1 retrogene
retro_dord_490,
Erinaceus europaeus ENSEEUG00000014973 ortholog_one2one 2 retrogenes
retro_eeur_431, retro_eeur_507,
Echinops telfairi ENSETEG00000009331 possible_ortholog 3 retrogenes
retro_etel_192, retro_etel_1921, retro_etel_766,
Felis catus ENSFCAG00000008591 ortholog_one2one 3 retrogenes
retro_fcat_539, retro_fcat_875, retro_fcat_954,
Homo sapiens ENSG00000116161 ortholog_one2one 2 retrogenes
retro_hsap_2355, retro_hsap_706,
Gorilla gorilla ENSGGOG00000005962 ortholog_one2one 2 retrogenes
retro_ggor_1788, retro_ggor_601,
Macropus eugenii ENSMEUG00000010725 ortholog_one2one 5 retrogenes
retro_meug_1472, retro_meug_1517, retro_meug_1751, retro_meug_236, retro_meug_95,
Macaca mulatta ENSMMUG00000001571 ortholog_one2many 1 retrogene
retro_mmul_175,
Mustela putorius furo ENSMPUG00000004813 ortholog_one2one 3 retrogenes
retro_mputfur_1058, retro_mputfur_1122, retro_mputfur_859,
Mus musculus ENSMUSG00000014226 ortholog_one2one 4 retrogenes
retro_mmus_1443, retro_mmus_2019, retro_mmus_2051, retro_mmus_567,
Nomascus leucogenys ENSNLEG00000015357 ortholog_one2one 3 retrogenes
retro_nleu_126, retro_nleu_2513, retro_nleu_318,
Oryctolagus cuniculus ENSOCUG00000004358 ortholog_one2one 3 retrogenes
retro_ocun_1249, retro_ocun_1362, retro_ocun_1852,
Otolemur garnettii ENSOGAG00000005375 ortholog_one2many 2 retrogenes
retro_ogar_2507, retro_ogar_2720,
Ochotona princeps ENSOPRG00000000316 ortholog_one2one 1 retrogene
retro_opri_674,
Procavia capensis ENSPCAG00000003742 ortholog_one2one 3 retrogenes
retro_pcap_237, retro_pcap_300, retro_pcap_449,
Pongo abelii ENSPPYG00000000486 ortholog_one2many 3 retrogenes
retro_pabe_207, retro_pabe_2130, retro_pabe_520,
Pan troglodytes ENSPTRG00000001705 ortholog_one2one 2 retrogenes
retro_ptro_1723, retro_ptro_505,
Rattus norvegicus ENSRNOG00000002572 ortholog_one2one 2 retrogenes
retro_rnor_2734, retro_rnor_589,
Ictidomys tridecemlineatus ENSSTOG00000010859 ortholog_one2one 4 retrogenes
retro_itri_1539, retro_itri_732, retro_itri_807, retro_itri_808,
Tursiops truncatus ENSTTRG00000010399 ortholog_one2one 1 retrogene
retro_ttru_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_581 73.13 97.39
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2. retro_cpor_759 74.05 68.70
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3. retro_cpor_1057 65.98 83.91
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4. retro_cpor_1207 73.29 61.30
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5. retro_cpor_1208 82.25 99.13
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6. retro_cpor_1276 58.47 50.43
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7. retro_cpor_1462 65.14 74.78
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Download FASTA sequences of all ENSCPOG00000012682 retrocopies