Parental gene:

FYTTD1, ENSCPOG00000011463

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:60430596..60456268(+)


>ENSCPOG00000011463
ATGAACCGGTTTAGTGCCCGGTTGGTAGGGGCCACGGCGACCCCGTCGCCGCCCCCGAAAGCCCGCAGCAATGAAAATCT
CGACAAAATCGATATGTCTCTAGATGATATTATCAAGTTGAATCGGAAGGAAGGAAAGAAGCACAATTTTCCAAGACTAA
ATAGAAGACTCCAGCAAAGTAGTGCTCGGCAGTTCAGGATGAGAGTACGGTGGGGAATCCAGCAAAATTCTGGTTTTGGT
AAAACTAGTCTGAGCCGAAGAGGAAAAGTAATGCCTGGGAAGAGACGCCCTTATGGAGTTATCACTGGCCTTGCAGCTAG
AAAAGCAACTGGAATTCGAAAAGGAGTTAGTCCTATGAATCGTCCCCCTCTAAGTGACAAGAACATAGAACGGTATTTTC
CAGTGTTAAAAAGAAAAGCAAACCTTCTGAGACAAAATGATGTGCAAAGAAAACCAGCTACAGTTCTCAAGAGACCTAAT
CAGTTAAACAGAAAAAGTAACATTCCAGCTAATTTTACCAGGAGTGCAAATAAATTAAGCCATCAGAAAGATACTCGTCA
GGCAACTTTTCTTTTCCGAAGAGGCCTGAAGGTTCAGGCCCAGTTGAACACAGAGCAACTGCTAGACGATGTAGTAGCAA
AGAGAACTCGTCACACAGAGGGTAGGACATTGGAAACCATAGGGTGCATATATGAAGGCAGAACTGACAAAAAGAAGATA
CAAAATGGGACAAAAGTTGGAAAAAGGATTAGAAGGACTATTATCCTCATACTAATTGGAAGAGTGTCAAGAGATGGTAC
TAAAAGGAAACTGAATGATGGTATGATGATCTTATTCAGTATACTAGGTATCAGTATTTCAAAAAAGACAGGGATGACTT
TGAATGAACGGTTTGGAATCCTAAAGGAACAAAGAGCCACTCTCACATACAACAAGGGAGGAAGCCGCTTTGTCACTGTG
GGATAG

Library Parental gene expression (RPM)
SRP017611_liver 8 .84 RPM
SRP017611_kidney 14 .03 RPM
SRP017611_brain 14 .67 RPM
SRP040447_lung 12 .36 RPM
SRP040447_skeletal_muscle 17 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014874 ortholog_one2one 1 retrogene
retro_btau_1572,
Canis familiaris ENSCAFG00000029695 ortholog_one2many 1 retrogene
retro_cfam_70,
Choloepus hoffmanni ENSCHOG00000002881 ortholog_one2one 2 retrogenes
retro_chof_1068, retro_chof_114,
Callithrix jacchus ENSCJAG00000016488 ortholog_one2one 2 retrogenes
retro_cjac_1639, retro_cjac_623,
Dasypus novemcinctus ENSDNOG00000007807 ortholog_one2one 6 retrogenes
retro_dnov_1010, retro_dnov_1224, retro_dnov_1311, retro_dnov_2013, retro_dnov_442, retro_dnov_570,
Erinaceus europaeus ENSEEUG00000001433 ortholog_one2many 1 retrogene
retro_eeur_13,
Echinops telfairi ENSETEG00000000700 ortholog_one2one 1 retrogene
retro_etel_765,
Homo sapiens ENSG00000122068 ortholog_one2one 2 retrogenes
retro_hsap_4291, retro_hsap_476,
Gorilla gorilla ENSGGOG00000011665 ortholog_one2one 1 retrogene
retro_ggor_450,
Macaca mulatta ENSMMUG00000006626 ortholog_one2one 1 retrogene
retro_mmul_577,
Nomascus leucogenys ENSNLEG00000015547 ortholog_one2one 2 retrogenes
retro_nleu_1047, retro_nleu_889,
Pongo abelii ENSPPYG00000014456 ortholog_one2one 2 retrogenes
retro_pabe_258, retro_pabe_3497,
Pan troglodytes ENSPTRG00000015796 ortholog_one2one 1 retrogene
retro_ptro_357,
Sorex araneus ENSSARG00000009996 ortholog_one2one 1 retrogene
retro_sara_148,
Sarcophilus harrisii ENSSHAG00000005704 ortholog_one2one 1 retrogene
retro_shar_242,
Tupaia belangeri ENSTBEG00000005595 ortholog_one2one 4 retrogenes
retro_tbel_2469, retro_tbel_2943, retro_tbel_4257, retro_tbel_791,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_586 70.00 55.14
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2. retro_cpor_1039 81.48 66.67
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Download FASTA sequences of all ENSCPOG00000011463 retrocopies