Parental gene:

ESD, ENSCPOG00000011089

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:56783418..56800470(-)


>ENSCPOG00000011089
ATGGCGTTGAAGCAGATTTCCAGCAACAAGTGCTTCGGGGGATTGCAGAAAGTTTTTGAACATGAAAGTGTGGAGCTAAA
ATGTAAAATGAAATTTGCTGTCTACTTACCACCAAAGGCAGAAACTGGAAAGTGCCCTGCCCTGTATTGGCTCTCTGGTT
TAACTTGCACAGAACAGAATTTTATAACAAAATCTGGTTACCATCAAGCTGCCTCAGAACACGGCCTCGTTGTCATCGCT
CCAGATACCAGCCCTCGTGAATGCAATATTAAAGGAGAAGATGATCACTGGGACTTCGGCACTGGCGCGGGGTTTTATGT
GAATGCTACTGAAGAGCCTTGGAAAACAAACTACAGGATGTACGCTTACGTAACAGAAGAGCTTCCCCAACTCATAAATG
CCAATTTTCCAGTGGACCCACAAAGGATGTCTATTTTTGGCCACTCCATGGGAGGCCATGGAGCTCTGATTTGTGCTTTG
AAAAACCCTGGAAAATACAAATCTGTGTCAGCATTTGCTCCACTTTGCAACCCAGTGCTCAGTGCTTTGGGCAGAAAAGC
CTTTACTGGATATTTGGGAACAGATGAAAGTAAATGGAAGACTTACGATGCAACTCATCTGGTGAAGTCTTACCCAGGTT
CTCAGCTGGACATACTGATTGATCAAGGAAAGGATGATGAGTTCCTTTCAGACGGACAGCTCCTCCCCGATAACTTCATC
GCTGCCTGCACAGAAAAGAAAATCCCCGTTGTTTTTAGATTACAAGAGGGTTATGATCATGGTTACTACTTCATTGCCAC
CTTCATTGCTGATCACATTAGACATCATGCAAAATACCTGAATGCATGA

Library Parental gene expression (RPM)
SRP017611_liver 132 .54 RPM
SRP017611_kidney 100 .81 RPM
SRP017611_brain 40 .84 RPM
SRP040447_lung 51 .45 RPM
SRP040447_skeletal_muscle 42 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013377 ortholog_one2one 2 retrogenes
retro_amel_1085, retro_amel_1803,
Bos taurus ENSBTAG00000003415 ortholog_one2one 1 retrogene
retro_btau_908,
Canis familiaris ENSCAFG00000004473 ortholog_one2one 2 retrogenes
retro_cfam_1381, retro_cfam_1762,
Callithrix jacchus ENSCJAG00000009380 ortholog_one2many 2 retrogenes
retro_cjac_24, retro_cjac_257,
Dasypus novemcinctus ENSDNOG00000017553 ortholog_one2one 2 retrogenes
retro_dnov_2502, retro_dnov_96,
Equus caballus ENSECAG00000024350 ortholog_one2one 1 retrogene
retro_ecab_808,
Felis catus ENSFCAG00000026826 ortholog_one2one 2 retrogenes
retro_fcat_1641, retro_fcat_812,
Loxodonta africana ENSLAFG00000006901 ortholog_one2one 1 retrogene
retro_lafr_843,
Macaca mulatta ENSMMUG00000004209 ortholog_one2one 1 retrogene
retro_mmul_1013,
Monodelphis domestica ENSMODG00000011290 ortholog_one2one 2 retrogenes
retro_mdom_1607, retro_mdom_1608,
Mustela putorius furo ENSMPUG00000001494 ortholog_one2one 2 retrogenes
retro_mputfur_1339, retro_mputfur_543,
Mus musculus ENSMUSG00000021996 ortholog_one2one 9 retrogenes
retro_mmus_1159, retro_mmus_1160, retro_mmus_1161, retro_mmus_1162, retro_mmus_1163, retro_mmus_1166, retro_mmus_1168, retro_mmus_1236, retro_mmus_1237,
Oryctolagus cuniculus ENSOCUG00000009968 ortholog_one2many 1 retrogene
retro_ocun_709,
Otolemur garnettii ENSOGAG00000010048 ortholog_one2many 1 retrogene
retro_ogar_162,
Ochotona princeps ENSOPRG00000011461 ortholog_one2one 2 retrogenes
retro_opri_230, retro_opri_845,
Procavia capensis ENSPCAG00000004402 ortholog_one2one 1 retrogene
retro_pcap_354,
Pteropus vampyrus ENSPVAG00000009910 ortholog_one2one 3 retrogenes
retro_pvam_1309, retro_pvam_299, retro_pvam_87,
Rattus norvegicus ENSRNOG00000009512 ortholog_one2one 2 retrogenes
retro_rnor_1053, retro_rnor_1593,
Sarcophilus harrisii ENSSHAG00000009581 ortholog_one2one 3 retrogenes
retro_shar_307, retro_shar_337, retro_shar_570,
Ictidomys tridecemlineatus ENSSTOG00000002854 ortholog_one2one 2 retrogenes
retro_itri_182, retro_itri_639,
Tupaia belangeri ENSTBEG00000005120 ortholog_one2many 7 retrogenes
retro_tbel_1621, retro_tbel_1776, retro_tbel_2, retro_tbel_296, retro_tbel_3059, retro_tbel_3072, retro_tbel_3698,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_568 96.10 100.00
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2. retro_cpor_1253 68.62 65.60
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3. retro_cpor_1396 76.27 62.41
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Download FASTA sequences of all ENSCPOG00000011089 retrocopies