Parental gene: | KIN, ENSCPOG00000010515 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_16:15546733..15580006(+) |
>ENSCPOG00000010515
ATGGGGAAGTCAGACTTTCTTACCCCCAAGGCTATCGCCAATAGGATTAAATCCAAAGGGCTTCAGAAGCTGCGCTGGTA
TTGCCAGATGTGTCAGAAGCAATGCCGGGACGAGAATGGCTTTAAGTGTCATTGTATGTCAGAATCTCATCAGAGACAGC
TATTGCTGGCTTCAGAAAATCCTCAGCAGTTTATGGATTATTTTTCAGAGGAATTCCGCAATGACTTTTTAGAACTTCTC
AGGAGACGCTTTGGCACCAAACGAGTCCATAACAATATTGTCTACAATGAGTACATCAGCCACCGAGAACATATTCATAT
GAATGCTACTCAGTGGGAAACACTGACTGACTTTACTAAGTGGCTGGGCAGAGAAGGCCTGTGCAAAGTGGATGAGACCC
CTAAAGGTTGGTATATTCAGTACATAGACAGGGACCCAGAGACCATTCGCCGGCAGCTCGAGCTAGAGAAGAAGAAAAAG
CAGGACCTTGATGATGAAGAAAAAACCGCCAAATTTATTGAAGAACAAGTGCGAAGAGGTCTGGAAGGGAAGGAGCAGGA
GGCCCCTGTCTTTACAGAATTAAGCAGAGAAAATGATGAAGAGAAAGTTACATTTAATCTGAATAAAGGAGCATGTAGTT
CATCAGGAGCAACAACTTCCAAATCAAGTTCTTTGGGGCCAAGTGCACTGAAGACGCTCGGGAGTACAGCATCAGTGAAA
CGAAAAGAAACTTCCCAGAGCTCAGCTCAGTCTAAAGAAAAGAAGAAAAAGAAATCTGCACTTGATGAAATCATGGAGAT
TGAAGAGGAAAAGAAAAGAACTTCTCGAACAGACTATTGGCTACAACCTGAAATTATCGTGAAAATTATAACCAAAAAAC
TTGGAGAGAAATACCATAAGAAAAAGGGTATTGTTAAGGAAGTAATTGACAGATATACAGCCGTTGTAAAGATGATTGAT
TCTGGAGACAAGCTGAAACTTGACCAGACTCATTTAGAGACAGTAATTCCAGCACCAGGAAAAAGAATTCTAGTTTTAAA
TGGAGGTTACAGAGGAAATGAAGGTACCCTAGAATCCATCAATGAAAAGACTTTTTCAGCTACTATAGTCATTGAAACTG
GCCCTTTAAAAGGACGCAGAGTTGAAGGAATTCAATATGAAGACATTTCTAAACTTGCCTAA
ATGGGGAAGTCAGACTTTCTTACCCCCAAGGCTATCGCCAATAGGATTAAATCCAAAGGGCTTCAGAAGCTGCGCTGGTA
TTGCCAGATGTGTCAGAAGCAATGCCGGGACGAGAATGGCTTTAAGTGTCATTGTATGTCAGAATCTCATCAGAGACAGC
TATTGCTGGCTTCAGAAAATCCTCAGCAGTTTATGGATTATTTTTCAGAGGAATTCCGCAATGACTTTTTAGAACTTCTC
AGGAGACGCTTTGGCACCAAACGAGTCCATAACAATATTGTCTACAATGAGTACATCAGCCACCGAGAACATATTCATAT
GAATGCTACTCAGTGGGAAACACTGACTGACTTTACTAAGTGGCTGGGCAGAGAAGGCCTGTGCAAAGTGGATGAGACCC
CTAAAGGTTGGTATATTCAGTACATAGACAGGGACCCAGAGACCATTCGCCGGCAGCTCGAGCTAGAGAAGAAGAAAAAG
CAGGACCTTGATGATGAAGAAAAAACCGCCAAATTTATTGAAGAACAAGTGCGAAGAGGTCTGGAAGGGAAGGAGCAGGA
GGCCCCTGTCTTTACAGAATTAAGCAGAGAAAATGATGAAGAGAAAGTTACATTTAATCTGAATAAAGGAGCATGTAGTT
CATCAGGAGCAACAACTTCCAAATCAAGTTCTTTGGGGCCAAGTGCACTGAAGACGCTCGGGAGTACAGCATCAGTGAAA
CGAAAAGAAACTTCCCAGAGCTCAGCTCAGTCTAAAGAAAAGAAGAAAAAGAAATCTGCACTTGATGAAATCATGGAGAT
TGAAGAGGAAAAGAAAAGAACTTCTCGAACAGACTATTGGCTACAACCTGAAATTATCGTGAAAATTATAACCAAAAAAC
TTGGAGAGAAATACCATAAGAAAAAGGGTATTGTTAAGGAAGTAATTGACAGATATACAGCCGTTGTAAAGATGATTGAT
TCTGGAGACAAGCTGAAACTTGACCAGACTCATTTAGAGACAGTAATTCCAGCACCAGGAAAAAGAATTCTAGTTTTAAA
TGGAGGTTACAGAGGAAATGAAGGTACCCTAGAATCCATCAATGAAAAGACTTTTTCAGCTACTATAGTCATTGAAACTG
GCCCTTTAAAAGGACGCAGAGTTGAAGGAATTCAATATGAAGACATTTCTAAACTTGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 3 .92 RPM |
| SRP017611_kidney | 6 .07 RPM |
| SRP017611_brain | 6 .67 RPM |
| SRP040447_lung | 6 .71 RPM |
| SRP040447_skeletal_muscle | 2 .37 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000004280 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000003732 | ortholog_one2one | 2 retrogenes | |
| Ficedula albicollis | ENSFALG00000001842 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002261 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000026690 | ortholog_one2one | 1 retrogene | |
| Taeniopygia guttata | ENSTGUG00000002119 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_279 | 57.65 | 63.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_281 | 63.99 | 96.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_818 | 60.90 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_987 | 69.87 | 60.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cpor_989 | 72.87 | 65.14 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000010515 retrocopies