Parental gene: | GALNT1, ENSCJAG00000021030 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 13:73279376..73346075(+) |
>ENSCJAG00000021030
ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGATGAAAAAAAGGAGAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAAAAGC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTTTACCAGATGTTAGGTTAGAAGGGTGTAA
AACAAAGGTGTATCCAGATAATCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGCACACTTCTGC
GAACTGTCCATAGTGTCATTAATCGCTCACCAAGACACATGATAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGGCCTTTAGAGAGTTATGTGAAAAAACTGAAAGTACCAGTTCATGTAATTCGAATGGAACAACGTTC
TGGATTGATCAGAGCTAGATTAAAAGGAGCTGCTGTGTCTAAAGGCCAAGTGATCACCTTCCTGGATGCTCATTGTGAGT
GTACAGTGGGATGGCTGGAACCTCTCTTGGCCAGGATCAAACATGACAGGAAAACAGTGGTGTGTCCTATCATCGATGTG
ATCAGCGATGATACTTTTGAGTACATGGCAGGCTCTGATATGACCTATGGCGGGTTCAACTGGAAGCTCAATTTTCGCTG
GTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGGACTCTTCCTGTCAGAACACCTACCATGGCAGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATTGTTACATGCTCACATGTTGGACATGTGTTTCG
GAAAGCTACACCTTACACGTTTCCAGGAGGTACAGGGCAGATTATCAATAAAAATAACAGACGACTTGCAGAAGTGTGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGA
GTTGGTCTAAGACACAAACTACAATGCAAACCTTTTTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCACG
TCACTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTTTAGATAACATGGCCAGAAAAGAGAATGAAA
AAGTTGGAATTTTTAATTGCCATGGTATGGGGGGTAATCAGGTTTTCTCTTACACTGCCAACAAAGAAATTAGAACAGAT
GACCTTTGCTTGGATGTCTCCAAACTTAATGGCCCAGTTACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTGTG
GGAGTATGACCCAGTGAAATTAACCCTACAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGCC
AGGTGCCCAGCATTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTTCGAAATGTCACCCTGCCAGAAATATTC
TGA
ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGATGAAAAAAAGGAGAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAAAAGC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTTTACCAGATGTTAGGTTAGAAGGGTGTAA
AACAAAGGTGTATCCAGATAATCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGCACACTTCTGC
GAACTGTCCATAGTGTCATTAATCGCTCACCAAGACACATGATAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGGCCTTTAGAGAGTTATGTGAAAAAACTGAAAGTACCAGTTCATGTAATTCGAATGGAACAACGTTC
TGGATTGATCAGAGCTAGATTAAAAGGAGCTGCTGTGTCTAAAGGCCAAGTGATCACCTTCCTGGATGCTCATTGTGAGT
GTACAGTGGGATGGCTGGAACCTCTCTTGGCCAGGATCAAACATGACAGGAAAACAGTGGTGTGTCCTATCATCGATGTG
ATCAGCGATGATACTTTTGAGTACATGGCAGGCTCTGATATGACCTATGGCGGGTTCAACTGGAAGCTCAATTTTCGCTG
GTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGGACTCTTCCTGTCAGAACACCTACCATGGCAGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATTGTTACATGCTCACATGTTGGACATGTGTTTCG
GAAAGCTACACCTTACACGTTTCCAGGAGGTACAGGGCAGATTATCAATAAAAATAACAGACGACTTGCAGAAGTGTGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGA
GTTGGTCTAAGACACAAACTACAATGCAAACCTTTTTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCACG
TCACTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTTTAGATAACATGGCCAGAAAAGAGAATGAAA
AAGTTGGAATTTTTAATTGCCATGGTATGGGGGGTAATCAGGTTTTCTCTTACACTGCCAACAAAGAAATTAGAACAGAT
GACCTTTGCTTGGATGTCTCCAAACTTAATGGCCCAGTTACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTGTG
GGAGTATGACCCAGTGAAATTAACCCTACAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGCC
AGGTGCCCAGCATTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTTCGAAATGTCACCCTGCCAGAAATATTC
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 54 .05 RPM |
| SRP051959_skeletal_muscle | 39 .83 RPM |
| SRP051959_lymph_node | 67 .94 RPM |
| SRP051959_lung | 54 .30 RPM |
| SRP051959_liver | 37 .06 RPM |
| SRP051959_kidney | 44 .57 RPM |
| SRP051959_heart | 37 .08 RPM |
| SRP051959_colon | 61 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000011206 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001978 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000000420 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003311 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000014610 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_865 | 84.67 | 80.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1554 | 92.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021030 retrocopies