Parental gene: | CCDC117, ENSCJAG00000020088 |
| Aliases: | None |
| Description: | coiled-coil domain containing 117 [Source:HGNC Symbol;Acc:26599] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:191701183..191714266(+) |
>ENSCJAG00000020088
ATGGCTGCGCTCGGCCGGCCCTTCAGCGGCCTCCCCCTGAGCGGCACCTCGGACTTCCTGCAGCCGCCGCCGCCTGCCTT
CCCCGGCCGGGCCTTCCCGCCAGGGGCGGACGGCGCTGAGCTGGCCCCGCGGCCAGGACCCCGCGTCGTCCCCAGCAGCC
CCGGCGGGAGTGCGGCGCGCGGACGTGTTTCTGTTTACTGTAAAAAGAAACACAAGCGAGAGGAGGAGGATGATGATTGT
CCAGTAAGAAAGAAAAGGATAACTGAAGCAGAGCTCTGTGCTCGTCCTAATGACTGGATTCTTTGTGCACATCAGGATGT
AGAGGGGCATGGAGTAAATCCCTGCACTAGTGGCCTTTCCGTACCTGGGATATTAGATGTTATTTGTGAAGAAATGGATC
AGACAACTGGAGAACCACAGTGTGAAGCTGCCCGAAGAAAGCTTCAGGAGATTGAGGACAGGATAATTGATGAAGATGAA
GAAGTTGAAGCTGTCAGAAATGTTAACCATCTCCCCAGTCTTGTCCTTTCTGATACCATGAAAACAGGTTTGAAGAGGGA
ATTTGATGAAGTTTTTACAAAGAAAATAATTGAGTCTATGAGCCGTCCTTCCATGGAGCTTGTTCTCTGGAAACCCCTCC
CTGAACTCCTTTCTGATAAGCCAAAGCCATCCTCTAATGCTAAAAACTATACAGGAGAGAGCCAAGATAAACATGCAGCT
GCTGGCACTGCCTTCCCTCAGAGAACTGAACTGTTTTTGGAACCTCGGCAAACAGGAATGTCTCTTTATGATAGTTTGGA
GACAGCTACTAGCACAGAAGAAGAGATGGAACTCTAG
ATGGCTGCGCTCGGCCGGCCCTTCAGCGGCCTCCCCCTGAGCGGCACCTCGGACTTCCTGCAGCCGCCGCCGCCTGCCTT
CCCCGGCCGGGCCTTCCCGCCAGGGGCGGACGGCGCTGAGCTGGCCCCGCGGCCAGGACCCCGCGTCGTCCCCAGCAGCC
CCGGCGGGAGTGCGGCGCGCGGACGTGTTTCTGTTTACTGTAAAAAGAAACACAAGCGAGAGGAGGAGGATGATGATTGT
CCAGTAAGAAAGAAAAGGATAACTGAAGCAGAGCTCTGTGCTCGTCCTAATGACTGGATTCTTTGTGCACATCAGGATGT
AGAGGGGCATGGAGTAAATCCCTGCACTAGTGGCCTTTCCGTACCTGGGATATTAGATGTTATTTGTGAAGAAATGGATC
AGACAACTGGAGAACCACAGTGTGAAGCTGCCCGAAGAAAGCTTCAGGAGATTGAGGACAGGATAATTGATGAAGATGAA
GAAGTTGAAGCTGTCAGAAATGTTAACCATCTCCCCAGTCTTGTCCTTTCTGATACCATGAAAACAGGTTTGAAGAGGGA
ATTTGATGAAGTTTTTACAAAGAAAATAATTGAGTCTATGAGCCGTCCTTCCATGGAGCTTGTTCTCTGGAAACCCCTCC
CTGAACTCCTTTCTGATAAGCCAAAGCCATCCTCTAATGCTAAAAACTATACAGGAGAGAGCCAAGATAAACATGCAGCT
GCTGGCACTGCCTTCCCTCAGAGAACTGAACTGTTTTTGGAACCTCGGCAAACAGGAATGTCTCTTTATGATAGTTTGGA
GACAGCTACTAGCACAGAAGAAGAGATGGAACTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 17 .18 RPM |
| SRP051959_skeletal_muscle | 9 .61 RPM |
| SRP051959_lymph_node | 14 .57 RPM |
| SRP051959_lung | 11 .47 RPM |
| SRP051959_liver | 18 .91 RPM |
| SRP051959_kidney | 12 .62 RPM |
| SRP051959_heart | 7 .95 RPM |
| SRP051959_colon | 9 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Microcebus murinus | ENSMICG00000004228 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000007214 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011845 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2465 | 64.24 | 57.47 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020088 retrocopies