Parental gene:

ARFGAP2, ENSCJAG00000019965

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:110434074..110445969(-)


>ENSCJAG00000019965
ATGGCGGCGGAACCGAGTAAGACCGAAATCCAGACCCTTTTTAAGAGGCTTCGCGCAGTTCCAACCAACAAGGCTTGTTT
CGATTGCGGCGCCAAGAATCCGAGTTGGGCCAGCATCACGTATGGCGTTTTCTTGTGCATTGACTGCTCCGGGGTGCACC
GCTCCCTGGGCGTCCATCTGAGCTTCATCAGGTCCACAGAGTTGGATTCCAACTGGAACTGGTTCCAGCTGAGGTGTATG
CAGGTCGGCGGGAATGCCAATGCGACGGCTTTTTTCCGCCAACATGGATGCACGGCCAGTGATGCCAACACCAAATACAA
TAGCCGAGCTGCCCAGATGTACCGGGAGAAGATCCGGCAGCTGGGGAGTGCAGCCCTGGCTAGGCACGGCACTGATCTTT
GGATAGACAACATGAGTAGTGCTGTTCCTAGTCACTCCCCGGAGAAGAAGGACTCTGATTTCTTCACAGAACACACTCAA
CCCCCTTCCTGGGATGCACCAGCCACTGAGCCCTCAGGGACCCAGCAGCCAGCGTCGTCTTCAGAAAGCAGTGGCCTGGC
ACAGCCAGAGCATGGCCCCAACACAGACCTGCTTGGCACCTCACCCAAAGCCTCACTGGAACTGAAAAGCTCCATCATTG
GCAAGAAGAAGCCAGCAACAGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTAGGGGCCCAGAAGGTGAGCAGCCAGAGC
TTCAACGAGATTGAACGGCAGGCCCAGGTGGCAGAGAAGCTCCGAGAGCAGCAGGCAGCCGATGCCAAGAGGCAGGCGGA
GGAGTCCATGGTCGCATCCATGCGGCTGGCCTATCAGGAGCTCCAGATTGATCGTAAGAAAGAGGAAAAAAAGCTACAAA
ATCTGGAAGGGAAGAAGCGAGAGCAGGCAGAGAGGCTGGGCATGGGCTTGGTATCTCGAAGCTCTGTCTCCCACTCCGTG
CTGTCTGAGATGCAGGTGATCGAGCAGGAAACCCCAGTGAGTGCAAAATCTTCTCGCTCGCAGCTGGACTTGTTTGATGA
TGTTGGTACTTTCGCCTCTGGACCCCCCAAGTACAAGGACAACCCCTTTTCCTTAGGAGAAAGCTTTGGTTCCCGCTGGG
ATACAGATGCCACCTGGGGCGTGGACAGGGTAGAGAAGGAGCCAGAAGTGACCGTCTCAAGCATCCGGCCTATTTCGGAA
AGGGCCACAAACCGGAGGGAGGTGGAGAGCCGGAGCACAGGCCTCGAGTCTAGTGAGGCGCGTCAGAAATTTGCAGGAGC
CAAAGCCATCTCATCTGACATGTTCTTTGGGCGGGAGGTGGATGCAGAGTATGAGGCTAGGTCTCGGCTGCAGCAGCTCT
CAGGCAGCAGTGCCATCAGCTCCTCAGACCTCTTTGGGGACATGGACGGAGCTCACGGAGCAGGAAGTGTATCTCTGGGG
AACGTGCTGCCTACAGCGGACATTGCCCAGTTTAAGCAGGGTGTCAAGTCTGTGGCCGGGAAGATGGCTGTGCTAGCCAA
TGGTGTGATGAATTCCTTGCAGGATCGCTACGGTTCCTACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 25 .50 RPM
SRP051959_skeletal_muscle 46 .54 RPM
SRP051959_lymph_node 26 .67 RPM
SRP051959_lung 27 .93 RPM
SRP051959_liver 27 .77 RPM
SRP051959_kidney 29 .73 RPM
SRP051959_heart 31 .27 RPM
SRP051959_colon 19 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Macropus eugenii ENSMEUG00000004984 ortholog_one2one 1 retrogene
retro_meug_1841,
Microcebus murinus ENSMICG00000007019 ortholog_one2many 1 retrogene
retro_mmur_51,
Mus musculus ENSMUSG00000027255 ortholog_one2one 1 retrogene
retro_mmus_2776,
Oryctolagus cuniculus ENSOCUG00000002073 ortholog_one2one 2 retrogenes
retro_ocun_1769, retro_ocun_599,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_415 89.83 100.00
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Download FASTA sequences of all ENSCJAG00000019965 retrocopies