Parental gene:

ENSCJAG00000019346

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:149562171..149572709(-)


>ENSCJAG00000019346
ATGCAGCTCAAGCCGATGGAGATCAACCCTGAGATGCTCAACAAAGTGCTGTCCCGCCTGGGGGTCGCCGGTCAGTGGCG
CTTTGTGGACGTCCTGGGGCTGGAGGAGGAGTCTCTGGGCTCGGTGCCAGCGCCTGCCTGCGCGCTGCTGCTGCTGTTTC
CCCTCACGGCCCAGCATGAGAACTTCAGGAAAAAACAGATTGAAGAGCTGAAGGGACAAGAAGTTAGTCCTAAAGTATAT
TTCATGAAGCAGACCATTGGGAACTCCTGTGGCACAATTGGACTTATACACGCAGTGGCCAATAATCAAGATAAACTGGG
ATTTGAAGAGGATGGATCAGTCCTGAAACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAGCAAAATGCT
TTGAAAAGAATGAGGCCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAATGTCGGGTAGATGACAAAGTGAAT
TTCCATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGACGAATGCCTTTTCCGGTGAACCATGG
CACCAGTTCAGAGGACACCCTGCTGCAGGATGCTGCCAAGGTCTGCAGAGAATTCACTGAGCGTGAGCAAGGAGAGGTCC
GCTTCTCTGCTGTGGCTCTCTGCAAGGCAGCCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 3 .84 RPM
SRP051959_skeletal_muscle 1 .20 RPM
SRP051959_lymph_node 0 .82 RPM
SRP051959_lung 1 .42 RPM
SRP051959_liver 0 .58 RPM
SRP051959_kidney 1 .64 RPM
SRP051959_heart 3 .44 RPM
SRP051959_colon 1 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003295 possible_ortholog 1 retrogene
retro_chof_1737,
Erinaceus europaeus ENSEEUG00000002185 ortholog_one2many 3 retrogenes
retro_eeur_150, retro_eeur_573, retro_eeur_598,
Echinops telfairi ENSETEG00000012347 ortholog_many2many 1 retrogene
retro_etel_44,
Felis catus ENSFCAG00000025457 possible_ortholog 1 retrogene
retro_fcat_1321,
Homo sapiens ENSG00000154277 ortholog_one2many 2 retrogenes
retro_hsap_781, retro_hsap_782,
Gorilla gorilla ENSGGOG00000008809 ortholog_one2many 1 retrogene
retro_ggor_648,
Macropus eugenii ENSMEUG00000013774 ortholog_many2many 1 retrogene
retro_meug_8,
Myotis lucifugus ENSMLUG00000010138 ortholog_one2many 2 retrogenes
retro_mluc_1216, retro_mluc_2113,
Nomascus leucogenys ENSNLEG00000017176 ortholog_one2many 2 retrogenes
retro_nleu_2582, retro_nleu_2583,
Oryctolagus cuniculus ENSOCUG00000001353 possible_ortholog 1 retrogene
retro_ocun_309,
Pan troglodytes ENSPTRG00000016009 ortholog_one2many 2 retrogenes
retro_ptro_3028, retro_ptro_3029,
Ictidomys tridecemlineatus ENSSTOG00000015507 possible_ortholog 1 retrogene
retro_itri_288,
Tupaia belangeri ENSTBEG00000011438 possible_ortholog 1 retrogene
retro_tbel_306,
Tarsius syrichta ENSTSYG00000008305 ortholog_one2many 1 retrogene
retro_tsyr_1191,
Tursiops truncatus ENSTTRG00000012095 possible_ortholog 1 retrogene
retro_ttru_1370,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_365 98.66 100.00
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Download FASTA sequences of all ENSCJAG00000019346 retrocopies