Parental gene:

ENSCJAG00000019165

Aliases:LOC100398789, PTTG1, securin
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:21552157..21559200(+)


>ENSCJAG00000019165
ATGGCTACTTTGATCTATGTTGATAAGGAAAATGGAGAAACAGGCACCCGTGTGGCTGCTAAGGATGGGCTGAAGCTGGG
GTCTGGACCTTCAGTCAAAGCCTTAAAGGGGAGATCTCAAGTTTCAACACCACGTTTTGGCAAAACGTATGATGCTCCAC
CAGCCTTACCTAAAGCTACTAGAAAGGCTTTGGGAACTGTCAACAGAGCTACAGAAAAGTCAGTGAAGACCAGTGGACTC
CTCAATCAAAAACAACCAAGCTTTTCTGCCAAAAAGATGACTGGGAAGACTGTTAAAGCAAAAAGCTCTGTTCCTGCCTC
AGATGATGCCTATCCAGAAATAGAAAAATTTTTTCCCTTCAATCCTCTAGACTTTGAGAGTTTTGACCTGCCTGAAGAGC
ACCAGATTGCACACCTACCCTTGAGTGGAGTGCCTCTTATGATCCTTGACGAGGAGAGAGAGCTTGAAAAGCTGTTTCAG
CTGGGCCCTCCTTCACCTGTGAAGATGCCCTCTCCACCATGGGAATCCGATCTGTTGCAGTCTCCTTCAAGCATTCTGTC
GACCCTGGATGTTGAATTGCCACCTGTTTGCTGTGACATAGATATTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 5 .67 RPM
SRP051959_skeletal_muscle 0 .41 RPM
SRP051959_lymph_node 7 .88 RPM
SRP051959_lung 6 .93 RPM
SRP051959_liver 1 .17 RPM
SRP051959_kidney 0 .95 RPM
SRP051959_heart 0 .61 RPM
SRP051959_colon 9 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012184 ortholog_one2many 2 retrogenes
retro_btau_122, retro_btau_53,
Canis familiaris ENSCAFG00000017264 ortholog_one2one 1 retrogene
retro_cfam_1586,
Choloepus hoffmanni ENSCHOG00000009464 ortholog_one2one 11 retrogenes
retro_chof_1246, retro_chof_1518, retro_chof_1679, retro_chof_2027, retro_chof_2161, retro_chof_2304, retro_chof_2459, retro_chof_2463, retro_chof_2690, retro_chof_426, retro_chof_526,
Cavia porcellus ENSCPOG00000011971 ortholog_one2many 2 retrogenes
retro_cpor_1151, retro_cpor_820,
Dasypus novemcinctus ENSDNOG00000024080 ortholog_one2one 4 retrogenes
retro_dnov_1400, retro_dnov_2553, retro_dnov_918, retro_dnov_949,
Dipodomys ordii ENSDORG00000007968 ortholog_one2one 1 retrogene
retro_dord_779,
Felis catus ENSFCAG00000024074 ortholog_one2one 3 retrogenes
retro_fcat_1153, retro_fcat_846, retro_fcat_878,
Homo sapiens ENSG00000164611 ortholog_one2many 4 retrogenes
retro_hsap_3823, retro_hsap_4068, retro_hsap_67, retro_hsap_881,
Gorilla gorilla ENSGGOG00000016937 ortholog_one2one 5 retrogenes
retro_ggor_2022, retro_ggor_2572, retro_ggor_2573, retro_ggor_2731, retro_ggor_714,
Loxodonta africana ENSLAFG00000011135 ortholog_one2one 1 retrogene
retro_lafr_258,
Macropus eugenii ENSMEUG00000005993 ortholog_one2one 1 retrogene
retro_meug_577,
Microcebus murinus ENSMICG00000006363 ortholog_one2one 1 retrogene
retro_mmur_181,
Myotis lucifugus ENSMLUG00000002317 ortholog_one2one 1 retrogene
retro_mluc_1080,
Macaca mulatta ENSMMUG00000023077 ortholog_one2one 3 retrogenes
retro_mmul_1052, retro_mmul_1629, retro_mmul_2347,
Mustela putorius furo ENSMPUG00000013241 ortholog_one2one 3 retrogenes
retro_mputfur_1358, retro_mputfur_429, retro_mputfur_813,
Nomascus leucogenys ENSNLEG00000004396 ortholog_one2one 5 retrogenes
retro_nleu_218, retro_nleu_2487, retro_nleu_2527, retro_nleu_2528, retro_nleu_830,
Oryctolagus cuniculus ENSOCUG00000014877 ortholog_one2many 2 retrogenes
retro_ocun_150, retro_ocun_1565,
Otolemur garnettii ENSOGAG00000012307 ortholog_one2many 2 retrogenes
retro_ogar_2802, retro_ogar_990,
Pongo abelii ENSPPYG00000016009 ortholog_one2one 4 retrogenes
retro_pabe_2428, retro_pabe_3071, retro_pabe_3341, retro_pabe_674,
Pan troglodytes ENSPTRG00000017492 ortholog_one2one 4 retrogenes
retro_ptro_1974, retro_ptro_2601, retro_ptro_2757, retro_ptro_610,
Pteropus vampyrus ENSPVAG00000015938 ortholog_one2one 2 retrogenes
retro_pvam_431, retro_pvam_704,
Sarcophilus harrisii ENSSHAG00000010267 ortholog_one2many 1 retrogene
retro_shar_104,
Tupaia belangeri ENSTBEG00000015966 ortholog_one2one 2 retrogenes
retro_tbel_2399, retro_tbel_771,
Tursiops truncatus ENSTTRG00000011570 ortholog_one2one 1 retrogene
retro_ttru_259,
Vicugna pacos ENSVPAG00000009594 ortholog_one2one 2 retrogenes
retro_vpac_178, retro_vpac_33,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2184 89.39 88.61
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2. retro_cjac_2293 80.46 85.64
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3. retro_cjac_2530 82.76 100.00
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4. retro_cjac_3062 56.15 62.87
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Download FASTA sequences of all ENSCJAG00000019165 retrocopies