RetrogeneDB ID:

retro_ogar_2802

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873665.1:166681..167283(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000012307
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2802
ATGGCTACTCTGATTTTTGTCGATAAGGAAAATGAAGAACCAGCCATCGTGTGGCTCCTAAAGATGGGCTGAAGTTGAAG
TCTAGACATTCAGTCAAAGCGTTAGATGGGAGATCTCAGGTTTCAACACCACATGTTGGCAAAACGTCTGATGCTCAGCT
AGCCTTACCTAAAGCTGCCAGAAAGGCTTTCGGAACTGTCAACAGAACTACAGAAAGGTCAGTAAAGACTAATGGACCCC
TCAAACAAAAACAGCTAAACTTCCCTGCAAAAAAGGTGACTGAGAAGACTACTGCAGCAAAAAGCTCTGTTTCTGTGGCA
GGTGACACCTATCCAGAAATAGAAAAATTCTTTCCTTTCGATCCTCTAGATTTTGAGAGTTTTGACCTGCCTGAAGAGCA
CCAGATTGCAGACCTCCCCTTGAATGGAGTGCCTCTCAGAATCCTTCATGAGGAGAGAAATTTTGAAAAGCTGTTAATGC
TGGATCCCCCTTCCCCTGTGAAAATGCTCTCTCCACCGTGGGAATCCGATCCGTTGCAGTCTCCTTCAAGCATTCTGTTG
GCCCTGGATGTTGAGTTGCCACCTGTTTGCTATGACATAGAT

ORF - retro_ogar_2802 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.14 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMATLIFVDKENGEPAT-RVAPKDGLKLKSRHSVKSLDARAQVSTPHVGKTFDAPPALPKAARKALGTVNR
MATLIFVDKEN.EPA..RVAPKDGLKLKSRHSVK.LD.R.QVSTPHVGKT.DA..ALPKAARKA.GTVNR
RetrocopyMATLIFVDKENEEPAI<RVAPKDGLKLKSRHSVKALDGRSQVSTPHVGKTSDAQLALPKAARKAFGTVNR
ParentalATEKSVKTNGPLKQKPLNFPAKKVTEKTAEAKNSVPAADDTYPEIEKFFPYNPLDFESFDLPEEHQIADL
.TE.SVKTNGPLKQK.LNFPAKKVTEKT..AK.SV..A.DTYPEIEKFFP..PLDFESFDLPEEHQIADL
RetrocopyTTERSVKTNGPLKQKQLNFPAKKVTEKTTAAKSSVSVAGDTYPEIEKFFPFDPLDFESFDLPEEHQIADL
ParentalPLNGVPLMILDEERNFEKLLKLGPPSPVKILSPPWESDPLQSPSSILSTLDVELPPVCYDID
PLNGVPL.IL.EERNFEKLL.L.PPSPVK.LSPPWESDPLQSPSSIL..LDVELPPVCYDID
RetrocopyPLNGVPLRILHEERNFEKLLMLDPPSPVKMLSPPWESDPLQSPSSILLALDVELPPVCYDID

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide