Parental gene:

SKP2, ENSCJAG00000018275

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:167417928..167452602(-)


>ENSCJAG00000018275
ATGCACAGGAAGCACCTCCAGGAGATTCCAGACCTGAGTAGCAACGTTGCCACTAGCTTCACGTGGGGATGGGATTCCAG
CAAGACTTCTGAACTGCTCTCAGGCATGGGGGTCTCCGCCCTGGAGAAAGAGGAGCCCGACAGTGAGAACATCCCCCAGG
AACTGCTCTCAAACCTGGGCATCCCGCAGAGCCCCCCAAGGAAACGGCTGAAGAGCAAAGGGAGTGACAAAGACTTTGTG
ATTATCCGCAGGCCTAAGCTAAATCGAGAGAACTTTCCAGGTGTTTCATGGGACTCCCTTCCGGATGAGCTGCTTTTGGG
GATCTTTTCCTGTCTGTGCCTCCCTGAGCTGCTAAAGGTCTCTGGTGTTTGTAGGAGATGGTATCGCCTAGCGTTTGACG
AGTCTCTGTGGCAAACCTTAGACCTCACAGGTAAAAATCTGCACCCGGATGTTACTGGTCGGTTGCTGTCTCAAGGGGTG
ATTGCCTTCCGCTGCCCACGATCATTTATGGACCAACCATTAGCTGAACATTTCAGCCCTTTTCGTGTGCAGCACATGGA
CCTGTCAAACTCGGTTATTGAAGTGTCCACCCTCCAGGGCATTCTGTCTCAGTGTTCCAAGTTGCAGAATCTAAGCCTGG
AAGGCCTGCGGCTGTCGGATCCCATTGTCAATAATCTTGCGCAAAACTCAAATTTAGTTCGACTTAACCTTTGTGGGTGT
TCTGGATTCTCTGAATTTGCCCTGCAGACTTTGCTAAGTGGCTGTTCCAGACTGGATGAGCTGAACCTCTCCTGGTGCTT
TGATTTTACTGAGAAGCATGTGCAGGTGGCTGTTGCGCATGTGTCAGAGACCATCACCCAGCTGAATCTTAGTGGCTACA
GAAAGAATCTCCAGAAATCAGATCTCTCTACTTTAGTTAGAAGATGCCCCAATCTTGTCCACCTAGACTTAAGTGACAGT
ATCATGCTGAAGAATGATTGCTTCCCGGAATTTTTCCAGCTCAACTACCTCCAACACCTGTCTCTCAGTCGGTGCTATGA
TATAATACCTGAAACTTTACTGCTAATTTGGATATCCCAGAACCAGAATTCTCATAACATTTCTCAAATTTCACATGAGG
GATTCAAAGTCGGAGCTGGATTGCTGTCATTATTAGTGACAAGAGCTGGGGTTAGGATTCAGTTGGACTCTGACATCGGA
TGCCCTCAAACATACAGAACTTCCAAACTCAAGTCCAGCCATAAGCTATTTTGCCAACATGTCAGAGTAATCTGTATTTT
TGTATGTGATTTCTACTTTTATAGACTTGTTTTAAAA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .47 RPM
SRP051959_skeletal_muscle 2 .40 RPM
SRP051959_lymph_node 8 .70 RPM
SRP051959_lung 7 .97 RPM
SRP051959_liver 5 .63 RPM
SRP051959_kidney 3 .39 RPM
SRP051959_heart 4 .58 RPM
SRP051959_colon 6 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013562 possible_ortholog 4 retrogenes
retro_btau_1108, retro_btau_1612, retro_btau_525, retro_btau_555,
Choloepus hoffmanni ENSCHOG00000006980 ortholog_one2one 1 retrogene
retro_chof_1604,
Cavia porcellus ENSCPOG00000013303 possible_ortholog 1 retrogene
retro_cpor_1166,
Nomascus leucogenys ENSNLEG00000016025 possible_ortholog 1 retrogene
retro_nleu_2553,
Oryctolagus cuniculus ENSOCUG00000009154 possible_ortholog 1 retrogene
retro_ocun_158,
Pelodiscus sinensis ENSPSIG00000008375 ortholog_one2many 1 retrogene
retro_psin_28,
Rattus norvegicus ENSRNOG00000016823 possible_ortholog 1 retrogene
retro_rnor_621,
Tupaia belangeri ENSTBEG00000016814 ortholog_one2one 1 retrogene
retro_tbel_4354,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2367 92.20 96.23
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Download FASTA sequences of all ENSCJAG00000018275 retrocopies