Parental gene:

NDFIP1, ENSCJAG00000018271

Aliases:None
Description:Nedd4 family interacting protein 1 [Source:HGNC Symbol;Acc:17592]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:39100571..39183187(+)


>ENSCJAG00000018271
ATGGCGTTGGCGTTGGCGGCGCTAGCGGCGGTCGAGCCGGCCTGTGGCAGCAGGTACCAGCAGTTGCAGAATGAAGAAGA
GTCTGGAGAACCTGAACAGGCTGCAGGTGATGCTCCACCACCTTACAGCAGCATTTCTGCAGAAAGCGCAGCATATTTTG
ACTACAAGGATGAGTCTGGGTTTCCAAAGCCCCCATCTTACAATGTGGCTACAACACTGCCCAGTTACGATGAAGCGGAG
AGGACCAAGGCTGAAGCTACTATCCCTTTGGTTCCTGGAAGAAGAGAGAGAGAGAGAGAGGATGAGGATTTTGTGGGTCG
GGATGATTTTGATGATGCTGATCAGCTGAGGATAGGAAACGATGGGATTTTCATGTTAACTTTTTTCATGGCATTCCTCT
TTAACTGGATTGGGTTTTTCCTGTCGTTTTGCCTGACTACTTCAGCTGCAGGAAGGTATGGGGCCATTTCAGGATTTGGT
CTCTCTCTAATTAAATGGATCCTGATTGTCAGGTTTTCCACCTATTTCCCTGGATATTTTGATGGTCAGTACTGGCTCTG
GTGGGTGTTCCTGGTTTTAGGCTTTCTCCTGTTTCTCAGAGGATTTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAA
CTTTATCAAATCTCCCCAGGACCAGAGTGCTCTTTATTTATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 49 .96 RPM
SRP051959_skeletal_muscle 33 .63 RPM
SRP051959_lymph_node 42 .42 RPM
SRP051959_lung 48 .40 RPM
SRP051959_liver 77 .22 RPM
SRP051959_kidney 100 .06 RPM
SRP051959_heart 43 .17 RPM
SRP051959_colon 46 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000047747 ortholog_one2one 1 retrogene
retro_btau_766,
Callithrix jacchus ENSCJAG00000021282 within_species_paralog 2 retrogenes
retro_cjac_2643, retro_cjac_2644,
Equus caballus ENSECAG00000021907 ortholog_one2one 1 retrogene
retro_ecab_261,
Homo sapiens ENSG00000131507 ortholog_one2one 1 retrogene
retro_hsap_1091,
Gorilla gorilla ENSGGOG00000004879 ortholog_one2one 1 retrogene
retro_ggor_859,
Macaca mulatta ENSMMUG00000016787 ortholog_one2one 1 retrogene
retro_mmul_846,
Pongo abelii ENSPPYG00000015896 ortholog_one2one 1 retrogene
retro_pabe_908,
Pan troglodytes ENSPTRG00000017358 ortholog_one2one 1 retrogene
retro_ptro_743,
Sarcophilus harrisii ENSSHAG00000002466 ortholog_one2one 1 retrogene
retro_shar_738,
Sus scrofa ENSSSCG00000025295 ortholog_one2many 1 retrogene
retro_sscr_301,
Ictidomys tridecemlineatus ENSSTOG00000005153 ortholog_one2one 1 retrogene
retro_itri_1454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3175 52.02 77.38
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Download FASTA sequences of all ENSCJAG00000018271 retrocopies